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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6swy5_

Fold library idPDB HeaderMoleculeTitle
c6swy5_3.20PDB header: ligaseChain: 5: PDB Molecule: vacuolar import and degradation protein 28;


Added to library: Sat Nov 23 08:26:19 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AYSLENLKKISNSLVGDQLAKVDYFLAPKCQIFQCLLSIEQSDGVELKNAKLDLLYTLLHLEPQQRDIVG
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Known secondary structure (DSSP)


TT
TTSGGGTS


TTS
T



 .........80.........90.........100.........110.........120.........130.........140
Sequence TYYFDIVSAIYKSMSLASSFTKNNSSTNYKYIKLLNLCAGVYPNCGFPDLQYLQNGFIQLVNHKFLRSKC
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Known secondary structure (DSSP) SS

TTTTTTTS


SS



TTTTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence KIDEVVTIIELLKLFLLVDEKNCSDFNKSKFMEEEREVTETSHYQDFKMAESLEHIIVKISSKYLDQISL
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Known secondary structure (DSSP)
T







TTS
TTS






TTSGGG


 .........220.........230.........240.........250.........260.........270.........280
Sequence KYIVRLPFDNKGVDCTRAIPKKINISNMYDSSLLSLALLLYLRYHYMIPGDRKLRNDATFKMFVLGLLKS
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Known secondary structure (DSSP)






TT





SS









TTSS

SS
STT
STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NDVNIRCVALKFLLQPYFTEDKKWEDTRTLEKILPYLVKSFNYDPLPWWFDPFDMLDSLIVLYNEITPMN
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Known secondary structure (DSSP) SSSSSTTS
TTS
SS

TT

STT
 .........360.........370.........380.........390.........400.........410.........420
Sequence NPVLTTLAHTNVIFCILSRFAQCLSLPQHNEATLKTTTKFIKICASFAASDEKYRLLLLNDTLLLNHLEY
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Known secondary structure (DSSP)
TTT
SS

TS
TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence GLESHITLIQDFISLKDEIKETTTESHSMCLPPIYDHDFVAAWLLLLKSFSRSVSALRTTLKRNKIAQLL
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Known secondary structure (DSSP) TTT
TT




TTTT
TTS

 .........500.........510.........520.........530.........540.........550.........560
Sequence LQILSKTYTLTKECYFAGQDFMKPEIMIMGITLGSICNFVVEFSNLQSFMLRNGIIDIIEKMLTDPLFNS
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Known secondary structure (DSSP)
GGG
STTTTSSS
TTTTTSTTT
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence KKAWDDNEDERRIALQGIPVHEVKANSLWVLRHLMYNCQNEEKFQLLAKIPMNLILDFINDPCWAVQAQC
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Known secondary structure (DSSP) TS


SS
STTS

STTT

S
TTTT
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence FQLLRNLTCNSRKIVNILLEKFTYLFEFLAKKMRLLNPLDTQQKKAMEGILYIIVNLAAVNENKKQLVIE
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Known secondary structure (DSSP) TT
ST


S
TTSTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence QDEILNIMSEILVETTTDSSSYGNDSNLKLACLWVLNNLLWNTRATVERCRKLVEVGLYDLVRKNITDES
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Known secondary structure (DSSP)
T

SS

SSGGG



TGGG
SS
 .........780.........
Sequence LSVREKARTLLYHMDLLLK
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Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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