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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6sh8K_

Fold library idPDB HeaderMoleculeTitle
c6sh8K_3.14PDB header: antiviral proteinChain: K: PDB Molecule: crispr-associated protein, cmr2 family;


Added to library: Sat Jul 11 08:35:42 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EFLDYKIIALLHDPPNKAWVITGRARNLTQQLSRKHEKVAKYIINQLFGKNYSEKVDNADKLASSIDRYL
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Known secondary structure (DSSP)




TTSS
TTTT
SS

TTTS



STTSSS



SSSSSSSSTTTSST
 .........80.........90.........100.........110.........120.........130.........140
Sequence GSIVYKERSLFENRSIFLKNILLSNIQRDIGNLFPKDKSKLDNLILEYKKLLNVINKTNLILKYQLFYLI
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Known secondary structure (DSSP)
TT
SSS

SS




SS
SS





S
S

STTSS

STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence YELVWIDSKYENTPSDTRNPTHTIFDHLYATAAMMNWILSLEKEAKGYLLGIDTIGVADFISKGRKTRDL
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Known secondary structure (DSSP) S




BS
TTSTTSBSSS

S
S

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence WISSYLVSALLWYVITWFIEEYGPDVILFPSLRFNQFYAFYLLEKLRKEGVSEDVIDEIKELITKYIFNG
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Known secondary structure (DSSP) S
STTS
GGG
TT


TTTTSSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence DDLFENLKIPPYPIIPGRITLILPGLIREGEEYKKVQDDNCFISKVKERYNEGWRKLIEGLRCYSERKRE
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Known secondary structure (DSSP)

SSS
SS



S
S
B
SSSS
B

S
SSTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence DGFWNLVCRVLKLTEDLLQTTPLNIRVKQVSVTEDEIFNNNKLRSDSWKIYDNKYRQLVSEFKKSKLVKV
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Known secondary structure (DSSP) SSTTSSS
SS




SSS

TTSSTS

 .........430.........440.........450.........460.........470.........480.........490
Sequence TPESRLKLFELTKFDKLPQIGEKSKRGYEFCTSCGVLPAVVIMPKEDELEKKLIDLGIARDEKDVRSIKN
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Known secondary structure (DSSP)
GGGGS

TT






SSTT
B
SSSSSSB
S


TTS
TTTTT
SSSSTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence MISPGERLCPWCLVKRALGAEPRLMRILLLGDLYSVEKIVNEIVSRDVKIEIPSTSDIASIKTFEEMIEK
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Known secondary structure (DSSP) TS
TT


TTTT
SSS
TT



B



TSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KNEICEDLKEEEVCEKPSESVLSMWQWFNKNYYNGINLTIDPEEYWFSEKRRRYYFSVFRRHRITFPSPY
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Known secondary structure (DSSP) S
SSSSSS



S

B
S
SSSSSS
TTS
TS
SSSSTT




S
 .........640.........650.........660.........670.........680.........690.........700
Sequence YALVRADSDYLGDLLEGKLTPYLAGIIDSGDYANISEKKEEVNKLLEEYLVNAGSGSIVDYVKTVLKCIR
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Known secondary structure (DSSP) SSTT
STTTSTTTS
STTTT
GGGGS

TTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence ENLNKCSCAEKIYSNEVAKVMFRVNVEKANVEEEVKNSLEYFETILNEGRIIVTPAWHVSISSALNRGLL
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Known secondary structure (DSSP) TT

TTTTGGGTTT
S


S

TS



 .........780.........790.........800.........810.........820.........830.........840
Sequence VELELVNKHKGFVIYAGGDDLLAMLPVDEVLDFIKESRRAFAGFGTEKLGNMCLENGFVRINNAYYPSLP
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Known secondary structure (DSSP) TT


TT

TTSTT

SS

SS
TTTT

S
 .........850.........860.........870.........880.........890.........900.........910
Sequence IVGRSYSVIIAHYADPLFFVINDSYNLLEEGKEIIRYRVMYNGEYKDAKKDVAIFRYQGLTSVIPLSLKR
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Known secondary structure (DSSP) SS
TTS
TTTSSSS
S
TTS
SBS
 .........920.........930.........940.........950.........960.........970.........980
Sequence PIVSSVSDFNEIASIIDVILELKKRIDEGRISVSLLYDYEKYKHLIVASDEKYLTEFLVKDWIKRNSLRK
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Known secondary structure (DSSP) S

SSSGGGGTTTTTTTTSB
GGGGGSTSS


TTB
SS
 .........990.........1000.........1010.........1020....
Sequence HVEFTIDEKLYGVRLTIENYPIKIPNDLISNIVYTLRIIYGGEK
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Known secondary structure (DSSP)






SSSTT
B
SS
S



SBTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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