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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6scjA_

Fold library idPDB HeaderMoleculeTitle
c6scjA_3.60PDB header: hormoneChain: A: PDB Molecule: thyroglobulin;


Added to library: Sat Feb 15 09:22:39 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YQVDAQPLRPCELQRETAFLKQADYVPQCAEDGSFQTVQCQNDGRSCWCVGANGSEVLGSRQPGRPVACL
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Known secondary structure (DSSP)

TTTTT
TTTTTT
S



B
SSSSB
S
TTSS
B
SSS
B
SS

BSS

S


 .........80.........90.........100.........110.........120.........130.........140
Sequence SFCQLQKQQILLSGYINSTDTSYLPQCQDSGDYAPVQCDVQQVQCWCVDAEGMEVYGTRQLGRPKRCPRS
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Known secondary structure (DSSP)
S



S





TTSS

S

SS
S


SSS

SS

SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence CEIRNRRLLHGVGDKSPPQCSAEGEFMPVQCKFVNTTDMMIFDLVHSYNRFPDAFVTFSSFQRRFPEVSG
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Known secondary structure (DSSP) TSS

S


B
SSS
B
STTTT


TT
SGGGSSTT
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence YCHCADSQGRELAETGLELLLDEIYDTIFAGLDLPSTFTETTLYRILQRRFLAVQSVISGRFRCPTKCEV
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Known secondary structure (DSSP) B
TTS
B
TT



SS



STTSS


SSSTTSS
SS


 .........290.........300.........310.........320.........330.........340.........350
Sequence ERFTATSFGHPYVPSCRRNGDYQAVQCQTEGPCWCVDAQGKEMHGTRQQGEPPSCAEGQSCASERQQALS
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Known secondary structure (DSSP)

S



B
SSSSB
S
TTS
B
TTS
B
TT


SSS



SSS
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence RLYFGTSGYFSQHDCPPTIKELFVDSGLLRPMVEGQSQQFSVSENLLKEAIRAIFPSRGLARLALQFTTN
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Known secondary structure (DSSP) TS
STTSSTT



TTTTTTTTTTTSSTTTS

SSSTT


TTTS
ST
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence PKRLQQNLFGGKFLVNVGQFNLSGALGTRGTFNFSQFFQQLGLASFLPTVGSFGFEINLQENQNALKFLA
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Known secondary structure (DSSP) GGGTTTSSTT

TTTS
SSSTT
TTTT
S







SSS



 .........500.........510.........520.........530.........540.........550.........560
Sequence SLLELPEFLLFLQHAISVPEDVARDLGDVMETVLSSQTCEQTPERLFVPSCTTEGSYEDVQCFSGECWCV
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Known secondary structure (DSSP) S
TS
TTT
SSTS





TT





SS



S
SSB
 .........570.........580.........590.........600.........610.........620.........630
Sequence NSWGKELPGSRVRGGQPRCPTDCEKQRARMQSLMGSQPAGSTLFVPACTSEGHFLPVQCFNSECYCVDAE
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Known secondary structure (DSSP)
SSS
B
TT

SS





TTTGGGS
TT






B
TTS
B
STT
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence GQAIPGTRSAIGKPKKCPTPCQLQSEQAFLRTVQALLSNSSMLPTLSDTYIPQCSTDGQWRQVQCNGPPE
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Known secondary structure (DSSP) S
TT






TTGGGGTTS




SS





B
SSS
B
SS


SS
T
 .........710.........720.........730.........740.........750.........760.........770
Sequence QVFELYQRWEAQNKGQDLTPAKLLVKIMSYREAASGNFSLFIQSLYEAGQAALEGKRPQPRENILILNGQ
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Known secondary structure (DSSP) TTTTTTTSSSS


TT




S

SSSS





SS
SSSGGGTT

T
 .........780.........790.........800.........810.........820.........830.........840
Sequence LSQYPGSYSDFSTPLAHFDLRNCWCVDEAGQELEGMRSEPSKLPTCPGSCEEAKLRVLQFIRETEEIVSA
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Known secondary structure (DSSP) TTS





S






TTS



B
TTS
B

S



TT






SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence SNSSRFPLGESFLVAKGIRLRNEDLGLPPLFPPREAFAEQFLRGSDYAIRLAAQSTLSFYQRRRLLRSGP
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Known secondary structure (DSSP) T
S
TTTT



TTTTSS
TTSS
TTSS







 .........920.........930.........940.........950.........960.........970.........980
Sequence YMPQCDAFGSWEPVQCHAGTGHCWCVDEKGGFIPGSLTARSLQIPQCPTTCEKSRTSGLLSSWKQARSQE
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Known secondary structure (DSSP)



B
SSSSB
STTTTB
SSS
B
TT


BS
SS





TTS

BSSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NPSPKDLFVPACLETGEYARLQASGAGTWCVDPASGEELRPAQCPSLCNVLKSGVLSRRVSPGYVPACRA
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Known secondary structure (DSSP) S

GGG




SSS


SS
TT

B
TTS
SB







TTTSS
SSS




S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EDGGFSPVQCDQAQGSCWCVMDSGEEVPGTRVTGGQPACESPRCPLPFNASEVVGGTILCETQCQLLCRQ
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Known secondary structure (DSSP) SS
S

S
B

TT




SS



TTS







S

TTS
SS
TTSSS
T
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GSWSVFPPGPLICSLESGRWESQLPQPRACQRPQLWQTIQTQGHFQLQLPPGKMCSADYADLLQTFQVFI
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Known secondary structure (DSSP) T
SS



B

SSSSS


SS


TT














SSS


TTTTSSSSSSSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LDELTARGFCQIQVKTFGTLVSIPVCNNSSVQVGCLTRERLGVNVTWKSRLEDIPVASLPDLHDIERALV
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Known secondary structure (DSSP) TT
S
TT



GGG

SSSS




GGGS
TTT


 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence GKDLLGRFTDLIQSGSFQLHLDSKTFPAETIRSPRTWFGCSEGFYQVLDGLGCVKCPEGSYSQDEECIPC
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Known secondary structure (DSSP) STTTSS

TT










SS
B







B


TTSSSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence PVGFYQEQAGSLACVPCPVGRTTISAGAFSQTHCVTDCQRNEAGLQCDQNGQYRASQKDRGSGKAFCVDG
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Known secondary structure (DSSP)
TT

SSS
SS

SSS

SSSTT

SGGG


TTSS
SS
TTB
STT
B
S
TTTT


S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence EGRRLPWWETEAPLEDSQCLMMQKFEKVPESKVIFDANAPVAVRSKVPDSEFPVMQCLTDCTEDEACSFF
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Known secondary structure (DSSP) S







BSS


TTSSSB




S





S


S

B


SS
TTTSSS


 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence TVSTTEPEISCDFYAWTSDNVACGSLRCQVKVRSHGQDSPAVYLKKGQGSTTTLQKRFEPTGFQNMLSGL
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Known secondary structure (DSSP)

SS




S
S





S






S

SS






SS
B
SS
B





S

SS

 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence YNPIVFSASGANLTDAHLFCLLACDRDLCCDGFVLTQVQGGAIICGLLSSPSVLLCNVKDWMDPSEAWAN
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Known secondary structure (DSSP)

SSS
GGGSS
SS
S

SSSS
SS
S

TTS


SS

SSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ATCPGVTYDQESHQVILRLGDQEFIKSFQQVYLWKDSDMGSRPESMGCRKDTVPRPASPTEAGLTTELFS
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SS confidence





































































Known secondary structure (DSSP)
TTT





SS

S




SSS















BTTBS
S









TTTTTS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence PVDLNQVIVNGNQSLSSQKHWLFKHLFSAQQANLWCLSRCVQEHSFCQLAEITESASLYFTCTLYPEAQV
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Known secondary structure (DSSP)

TTS
S
S



B

TTT

STTT
S

SSTT





 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence CDDIMESNAQGCRLILPQMPKALFRKKVILEDKVKNFYTRLPFQKLMGISIRNKVPMSEKSISNGFFECE
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Known secondary structure (DSSP) B
S


SSGGG
SS

S




SS
S



S
SS


B

SS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence RRCDADPCCTGFGFLNVSQLKGGEVTCLTLNSLGIQMCSEENGGAWRILDCGSPDIEVHTYPFGWYQKPI
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Known secondary structure (DSSP) TSTT



S
GGGT







TTSTTSS

S



TT
B

STT





 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence AQNNAPSFCPLVVLPSLTEKVSLDSWQSLALSSVVVDPSIRHFDVAHVSTAATSNFSAVRDLCLSECSQH
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Known secondary structure (DSSP)
SS


TTS







SS


GGGS
GGG
TT

STTS
S
TT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence EACLITTLQTQPGAVRCMFYADTQSCTHSLQGQNCRLLLREEATHIYRKPGISLLSYEASVPSVPISTHG
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Known secondary structure (DSSP) SS

TT


B


SS


SS

S




S
TT
B
SSS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence RLLGRSQAIQVGTSWKQVDQFLGVPYAAPPLAERRFQAPEPLNWTGSWDASKPRASCWQPGTRTSTSPGV
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Known secondary structure (DSSP)


TT
S



SSSTTT








BS




TT

S


TT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence SEDCLYLNVFIPQNVAPNASVLVFFHNTMDREESEGWPAIDGSFLAAVGNLIVVTASYRVGVFGFLSSGS
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Known secondary structure (DSSP) S


SS

SS





SSS
S
SS
SS
TTS



SSSSS


TT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence GEVSGNWGLLDQVAALTWVQTHIRGFGGDPRRVSLAADRGGADVASIHLLTARATNSQLFRRAVLMGGSA
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Known secondary structure (DSSP) SS

S
TTTTT

TTS

SSTSGGGT



GGG


SS

S
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence LSPAAVISHERAQQQAIALAKEVSCPMSSSQEVVSCLRQKPANVLNDAQTKLLAVSGPFHYWGPVIDGHF
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Known secondary structure (DSSP) SSTTSS

TTTT


SSTTTTTTTGGGS
TTTSSTTTTS





TTT
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LREPPARALKRSLWVEVDLLIGSSQDDGLINRAKAVKQFEESRGRTSSKTAFYQALQNSLGGEDSDARVE
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Known secondary structure (DSSP)
SS
TTS

S



SS

TTGGGT
TTTS
TT

 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence AAATWYYSLEHSTDDYASFSRALENATRDYFIICPIIDMASAWAKRARGNVFMYHAPENYGHGSLELLAD
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Known secondary structure (DSSP) TT



SS
SSTTT
SS





S



SS
TT
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence VQFALGLPFYPAYEGQFSLEEKSLSLKIMQYFSHFIRSGNPNYPYEFSRKVPTFATPWPDFVPRAGGENY
Predicted secondary structure













































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Known secondary structure (DSSP) TTTTTTGGG
STTSSSS
SSTSSTT
SSSS





SS







STT

 .........2530.........2540.........2550.
Sequence KEFSELLPNRQGLKKADCSFWSKYISSLKTS
Predicted secondary structure










SS confidence






























Known secondary structure (DSSP)
STT


SSTTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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