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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6savB_

Fold library idPDB HeaderMoleculeTitle
c6savB_1.40PDB header: hydrolaseChain: B: PDB Molecule: alpha-amylase;


Added to library: Sat Oct 26 08:42:08 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATSDDWKSKAIYQLLTDRFGRADDSTSNCSNLSNYCGGTYEGITKHLDYISGMGFDAIWISPIPKNSDGG
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Known secondary structure (DSSP)

TT





SS





S
TTS




TTTTT




B
BSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YHGYWATDFYQLNSNFGDESQLKALIQAAHERDMYVMLDVVANHAGPTSGYSGYTFGDASLYHPKCTIDY
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Known secondary structure (DSSP) TTS
SBS
TTSB
TTT

TT


SB






TTSSS
SGGGB






T
 .........150.........160.........170.........180.........190.........200.........210
Sequence NDQTSIEQCWVADELPDIDTENSDNVAILNDIVSGWVGNYSFDGIRIDTVKHIRKDFWTGYAEAAGVFAT
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Known secondary structure (DSSP) T
S
GGGTS
BB
TTST
STTGGGS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence GEVFNGDPAYVGPYQKYLPSLINYPMYYALNDVFVSKSKGFSRISEMLGSNRNAFEDTSVLTTFVDNHDN
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Known secondary structure (DSSP)



S
GGGGGTSSB
TS

S
T
S
GGGS
S

TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PRFLNSQSDKALFKNALTYVLLGEGIPIVYYGSEQGFSGGADPANREVLWTTNYDTSSDLYQFIKTVNSV
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Known secondary structure (DSSP)




SSSTTGGGT



STTTTS

GGGGTT
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RMKSNKAVYMDIYVGDNAYAFKHGDALVVLNNYGSGSTNQVSFSVSGKFDSGASLMDIVSNITTTVSSDG
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Known secondary structure (DSSP) TSS



SSTT
S
TT



TTTS
TT
TTT



TTS
 .........430.......
Sequence TVTFNLKDGLPAIFTSA
Predicted secondary structure




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Known secondary structure (DSSP)
STT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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