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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6s85D_

Fold library idPDB HeaderMoleculeTitle
c6s85D_4.20PDB header: dna binding proteinChain: D: PDB Molecule: nuclease sbccd subunit c;


Added to library: Sat Sep 7 08:42:18 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQND
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Known secondary structure (DSSP)

SSSS
TTT
SSSSSS


STTSSS

SSSS

SSS


 .........80.........90.........100.........110.........120.........130.........140
Sequence LMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLT
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Known secondary structure (DSSP)
S
SS
STT
SSSSSSS





TTTT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELETQQVEDWGY
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Known secondary structure (DSSP) S

T
TT
TSS
TTT
TTTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence LNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLS
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Known secondary structure (DSSP) TTS

SSS
SS
SSSS

TTTS


B
GGG

 .........290.........300.........310.........320.........330.........340.........350
Sequence GGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKE
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Known secondary structure (DSSP) T
SSS




S
GGGS
TTTTT




GGGTT
 .........360.........370.....
Sequence RIPVQIKVKKINGLGYSKLESTFAV
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Known secondary structure (DSSP) T


B


TTSS

TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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