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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6s2fA_

Fold library idPDB HeaderMoleculeTitle
c6s2fA_5.80PDB header: replicationChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;


Added to library: Sat Jul 11 08:40:44 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALSAQQLLNASKIDDIDSMMGFERYVPPQYNGRFDAKDIDQIPGRVGWLTNMHATLVSQQGISGVDFYFL
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Known secondary structure (DSSP)

TT

B






S


STTTTTSSS



 .........80.........90.........100.........110.........120.........130.........140
Sequence DEEGGSFKSTVVYDPYFFIACNDESRVNDVEELVKKYLESCLKSLQIIRKEDLTMDNHLLGLQKTLIKLS
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Known secondary structure (DSSP)
TTS




S
GGGTTTTB



B
TTSTTGGGT

 .........150.........160.........170.........180.........190.........200.........210
Sequence FVNSNQLFEARKLLRPILQDIREYDVPYHVRVSIDKDIRVGKWYKVTQQGFIEDTRKIAFADPVVMAFAI
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Known secondary structure (DSSP) BSS


S
S

TT

TTSTT
TT

S




 .........220.........230.........240.........250.........260.........270.........280
Sequence ATTKPPLKFPDSAVDQIMMISYMIDGEGFLITNREIISEDIEDFEYTPKPEYPGFFTIFNENDEVALLQR
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Known secondary structure (DSSP)


TTS


TTT

TTTTTS
S





SSTTS

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence FFEHIRDVRPTVISTFNGDFFDWPFIHNRSKIHGLDMFDEIGFAPDAEGEYKSSYCSHMDCFRWVKRDSY
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Known secondary structure (DSSP)

SSSTTTTTT

S

TTS

SSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LPQGSQGLKAVTQSKLGYNPIELDPELMTPYAFEKPQHLSEYSVSDAVATYYLYMKYVHPFIFSLCTIIP
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Known secondary structure (DSSP)

GGG
ST
S






TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LNPDETLRKGTGTLCEMLLMVQAYQHNILLPNKHTDPILESETYVGGHVESLEAGVFRSDLKNEFKIDPS
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Known secondary structure (DSSP) S
S
TTB

















S



TTS


 .........500.........510.........520.........530.........540.........550.........560
Sequence AIDELLQELPEALKFSVEVENKSSVDKVTNFEEIKNQITQKLLELKENNIRNELPLIYHVDVASMYPNIM
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Known secondary structure (DSSP) TTS


GGGBSSS

T
 .........570.........580.........590.........600.........610.........620.........630
Sequence TTNRLQPDSIKAERDCASCDFNRPGKTCARKLKWAWRGEFVSEIVEREAIVCQRENPFYVDTVKSFRDRR
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Known secondary structure (DSSP) T

GGGB
TT
SSSSS

TTTSSSS

TTS


 .........640.........650.........660.........670.........680.........690.........700
Sequence YEFKGLAKTWKGNLSKIDPSDKHARDEAKKMIVLYDSLQLAHKVILNSFYGYVMRKGSRWYSMEMAGITC
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Known secondary structure (DSSP) S
S
STTT
TTSTT
SS

 .........710.........720.........730.........740.........750.........760.........770
Sequence LTGATIIQMARALVERVGRPLELDTDGIWCILPKSFPETYFFTLENGKKLYLSYPCSMLNYRVHQKFTNH
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Known secondary structure (DSSP) STTTTS

BTTS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence QYQELKDPLNYIYETHSENTIFFEVDGPYKAMILPSSKEEGKGIKKRYAVFNEDGSLAELKGFELKRRGE
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Known secondary structure (DSSP) TTTT





S
B
SSTT
B
TT


TTS

SSTTTSSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence LQLIKNFQSDIFKVFLEGDTLEGCYSAVASVCNRWLDVLDSHGLMLEDEDLVSLICENRSMSKTLKSTSI
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Known secondary structure (DSSP)
TTSSSSTTTTTS




SS



 .........920.........930.........940.........950.........960.........970.........980
Sequence TTARRLGDFLGEDMVKDKGLQCKYIISSKPFNAPVTERAIPVAIFDIRTIIDWGYYRERLGSAIQKIITI
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Known secondary structure (DSSP)
TTTTTSS



BS
STT



TT

B
T
 .........990.........1000......
Sequence PAALQGVSNPVPRVEHPDWLKRKIAT
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Known secondary structure (DSSP) TT


SSTTS


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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