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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6rwaD_

Fold library idPDB HeaderMoleculeTitle
c6rwaD_4.00PDB header: toxinChain: D: PDB Molecule: tcda4;


Added to library: Sat Oct 26 08:44:49 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LTDICHYSFNEFRQQVSDHLSWSETNRLYRDAQQEQKENQLYEARILKRANPQLQNAVHLGITLPHAELR
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Known secondary structure (DSSP)

TTTS
TTTSSSS
TTS
TTTTT
GGG




 .........80.........90.........100.........110.........120.........130.........140
Sequence GYNSEFGGRASQYVAPGSVSSMFSPAAYLTELYREARNLHASDSVYHLDERRPDLQSMTLSQQNMDTELS
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Known secondary structure (DSSP) TSSTTT

B
SS
SSBSSSTTSS
TT
SS
T
S
B



 .........150.........160.........170.........180.........190.........200.........210
Sequence TLSLSNEILLKGIKANQSNLDSDTKVMEMLSTFRPSGTIPYHDAYENVRKAIQLQDPKLEQFQKSPAVAG
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Known secondary structure (DSSP) TTS

SS


SSS




STTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LMHQASLLGINNSISPELFNILTEEITEANAEAIYKQNFGDIDPACLAMPEYLKSYYNFSDEELSQFIRK
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Known secondary structure (DSSP) S
TT





SSSTT

ST

TSSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence YPDNELNTQKIHLLKINKIILLSQAVNLPFLKLDEIIPEQNITPTVLGKIFLVKYYMQKYNIGTETALIL
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Known secondary structure (DSSP)

SS

S

S


T

S
SSS





 .........360.........370.........380.........390.........400.........410.........420
Sequence CNDSISQYSYSNQPSQFDRLFNTSPLNGQYFVIEDTNIDLSLNSTDNWHKAVLKRAFNVDDISLYRLLHI
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Known secondary structure (DSSP) TT






BTTB

S
SS
GGG





S


STT



T

 .........430.........440.........450.........460.........470.........480.........490
Sequence ANHNNTDGKIANNIKNLSNLYMTKLLADIHQLTIDELYLLLITIGEDKINLYDIDDKELEKLINRLDTLS
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Known secondary structure (DSSP)
TT

SS

STTT

T
SS

SSS

 .........500.........510.........520.........530.........540.........550.........560
Sequence NWLHTQKWSIYQLFLMTTTNYDKTLTPEIQNLLDTVYNGLQNFDKNKTKLLAAIAPYIAATLQLPSENVA
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Known secondary structure (DSSP) T










S
S

TTTS
TT
S
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence HSILLWADKIKPSENKITAEKFWIWLQNRDTTELSKPPEMQEQIIQYCHCLAQLTMIYRSSGINENAFRL
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Known secondary structure (DSSP)

SSS


S

SS




SS


 .........640.........650.........660.........670.........680.........690.........700
Sequence FIEKPTIFGIPDEPNKATPAHNAPTLIILTRFANWVNSLGEKASPILTAFENKTLTAEKLANAMNLDANL
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Known secondary structure (DSSP)
SGGGTS


TTT



S
SGGGTT


TTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence LEQASIQAQNYKQVTKENTFSNWQSIDIILQWTNIASNLNISPQGISPLIALDYIKPAQKTPTYAQWENA
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Known secondary structure (DSSP) SS


SSTTTTST

TTSTT
SSTT
SS


 .........780.........790.........800.........810.........820.........830.........840
Sequence AIALTAGLDTQQTHTLHVFLDESRSTALSNYYIGKVANRAASIKSRDDLYQYLLIDNQVSAEIKTTRIAE
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Known secondary structure (DSSP) T

TS
TTS


SSS
SSS
TT

 .........850.........860.........870.........880.........890.........900.........910
Sequence AIASIQLYVNRALENIEIHAVSDVITRQFFIDWDKYNKRYSTWAGVSQLVYYPENYIDPTMRIGQTKMMD
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Known secondary structure (DSSP) TT
SS


TSTTSS
GGGT

SSS
TT

 .........920.........930.........940.........950.........960.........970.........980
Sequence TLLQSVSQSQLNADTVEDAFKSYLTSFEQVANLEVISAYHDNVNNDQGLTYFIGNSKTEVNQYYWRSVDH
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Known secondary structure (DSSP) T
SSS

T

SSSTTSS
SSSS


S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SKFNDGKFAANAWSEWHKIDCAINPYQSTIRPVIYKSRLYLIWLEQKETAKQKEDNKVTTDYHYELKLAH
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Known secondary structure (DSSP) TTTT
TTSB




S



SSS
TT

B

SS
B

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IRYDGTWNVPITFDVDEKILALELTKSQAPGLYCAGYQGEDTLLIMFYRKKEKLDDYKTAPMQGFYIFSD
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Known secondary structure (DSSP) B
SSS
B



S


TT




TTTT


BS
GGGGGTS


TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence MSSKDMTNEQCNSYRDNGYTHFDTNSDTNSVIRINNRYAEDYEIPSLINHSNSHDWGEYNLSQVYGGNIV
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Known secondary structure (DSSP) S


SGGG

B


TTS







S

S
S
S
B
GGGS



 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence INYKVTSNDLKIYISPKLRIIHDGKEGRERIQSNLIKKYGKLGDKFIIYTSLGINPNNSSNRFMFYPVYQ
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Known secondary structure (DSSP) TT



TTSS
TT

TTT

SS




 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YNGNTSGLAQGRLLFHRDTSYSSKVAAWIPGAGRSLINENANIGDDCAEDSVNKPDDLKQYIYMTDSKGT
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Known secondary structure (DSSP)
SSSSS

SS




S



TTT

SS

SS
SS

GGGGSS

SSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence ATDVSGPVDINTAISSEKVQITIKAGKEYSLTANKDVSVQPSPSFEEMCYQFNALEIDGSNLNFTNNSAS
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Known secondary structure (DSSP)



STTSSSB


SS




SS



S
S


BTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence IDVTFTALADDGRKLGYEIFNIPVIQKVKTDNALTLFHDENGAQYMQWGAYRIRLNTLFARQLVERANTG
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Known secondary structure (DSSP)
TTS


SSS



SSS
TT



TTS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence IDTILSMETQNIQEPMMGIGAYIELILDKYNPDIHGTNKSFKIIYGDIFKAGDHFPIYQGALSDITQTTV
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Known secondary structure (DSSP) TST


SSSB




S
S

BSSSSSSB


S

SS


 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence KLFLPRVDNAYGNKNNLYVYAAYQKVETNFIRFVKEDNNKPATFDTTYKNGTFPGLASARVIQTVSEPMD
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Known secondary structure (DSSP)

SS
SS
SS
BB

SS








SSSS


TTTTSS

SSB











 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence FSGANSLYFWELFYYTPMMVAQRLLHEQNFDEANRWLKYVWSPSGYIVRGQIKNYHWNVRPLLENTSWNS
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Known secondary structure (DSSP) SSSTTTTT
TTTB
TT

TT
S
SBSSS




S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence DPLDSVDPDAVAQHDPMHYKVATFMRTLDLLMARGDHAYRQLERDTLNEAKMWYMQALHLLGNKPYLPLS
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Known secondary structure (DSSP)
GGGS


TTS


S




SS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence SVWNDPRLDNAAATTTQKAHAYAITSLRQGTQTPALLLRSANTLTDLFLPQINDVMLSYWNKLELRLYNL
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Known secondary structure (DSSP)
S



BT
T
S




TTTSS
B
B

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence RHNLSIDGQPLHLPIYATPADPKALLSAAVATSQGGGKLPESFISLWRFPHMLENARSMVTQLIQFGSTL
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Known secondary structure (DSSP) TTB
SS

BSS
































SB
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence QNIIERQDAESLNALLQNQAKELILTTLSIQDKTIEEIDAEKTVLEKSKAGAKSRFDNYSKLYDEDVNAG
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Known secondary structure (DSSP) S
S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence ERQALDMRIASQSITSGLKGLHMAAAALEMVPNIYGFAVGGTRYGAIANAIAIGGGIAAEGLLIEAEKVS
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Known secondary structure (DSSP) TTTT
S

B
SSS
B


ST
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence QSEIWRRRRQEWEIQRNNAEAEMKQIDAQLKSLTVRREAAVLQKTGLKTQQEQTQAQLAFLQRKFSNQAL
Predicted secondary structure



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Known secondary structure (DSSP) SSS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence YNWLRGRLAAIYFQFYDLVVARCLMAEQAYRWETNDSSARFIKPGAWQGTYAGLLAGETLMLNLAQMEDA
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Known secondary structure (DSSP) TT
SS




S
S

GGGTT


 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence HLKQEQRALEVERTVSLAQVYQSLGEKSFALKDKIEALLQGDKETSAGNDGNQLKLTNNTLSATLTLQDL
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Known secondary structure (DSSP) S



SSSSS


S
SS

B

TTT

SS
TTTT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence KLKDDYPEEMQLGKTRRIKQISVSLPALLGPYQDVQAVLSYGGDATGLAKGCKALAVSHGLNDNGQFQLD
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Known secondary structure (DSSP)
GGGGS

TTTT
S


S

BTTB



STTSSS
TTTT
SS

SSSS

 .........2320.........2330.........2340.........2350.........2360.
Sequence FNDGKFLPFEGIDINDKGTFTLSFPNAASKQKNILQMLTDIILHIRYTILE
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Known secondary structure (DSSP) TT
SB

TTTT
BSS
SSS
TTTTS






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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