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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6rw9E_

Fold library idPDB HeaderMoleculeTitle
c6rw9E_3.27PDB header: toxinChain: E: PDB Molecule: insecticidal toxin protein tcda4;


Added to library: Sat Oct 26 10:20:14 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VTLADFMPMSLAEIRSQNTGRLSREEAQLLHRAAQKEKQNNILYTARMLTRANPLLKKEMRAEKFVAPGA
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Known secondary structure (DSSP)
TTTTTSSS
S
TTTS
GGG
GGGGGG


S

B
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VSSMFSPAGYLTELYREARGLHPKDSDRNLDKRRQDLAKLVLSQDNLDNEISALSLANEQLETALMAQTG
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Known secondary structure (DSSP) TTBTTSTTSS
TTSTT

TTSSS
B



 .........150.........160.........170.........180.........190.........200.........210
Sequence KTDKNKYYETLATSRRSGVTPYNAPFEGIHNALAQRNFVLPDNILSNPAKFAILAAYDAGISPKLYNILT
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Known secondary structure (DSSP)


SSS

SSSS
S

TT

GGG
SSS
GGG


 .........220.........230.........240.........250.........260.........270.........280
Sequence EDTESLTGSDLENSLKRNFPKVKIKDLMTLDALANYYELPADDIQALIAAEITGRLPTPDVYNDDNKLVI
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Known secondary structure (DSSP)


SS

T
SSS
TSTTS
TS

SSS



SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PAINTGGKITFSELAKTQSDEKQADYIDLIPQGGNQFLVNFSVKKTKKDATHFSIGYNKSFNNLADKNGF
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Known secondary structure (DSSP) TTT



SSS


TT

S


S

SS

BTTTB








 .........360.........370.........380.........390.........400.........410.........420
Sequence VPLAGEHYSIPVTLDAKILEKKTKIGITRKKPEPASDENHYTSATFTIHPNAEPGIWLLRLNKTLRLAKV
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Known secondary structure (DSSP)


TT




S







SSS
SS
SS
B


S


 .........430.........440.........450.........460.........470.........480.........490
Sequence SGMTPHETQHALIHVRNDSSEYELRRFTETLLYRKRYGIDTETALMLCNAGISRISYDGQLSHFDRLFNN
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Known secondary structure (DSSP)
S
T



TT

STT

TT




S
SSSS


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence PPLNGVTYTLGGDDILMEPDAGDPRREVLKRAFRVDNTGLWQLLVITNRENKSKTIENKTEKLRGLLFVR
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Known secondary structure (DSSP) S
BTTB





S

SSSS

TTT

BSS


S

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence LLADVHNLTVAQLDALLQISPYNSMNVYALDGKTRQKMLSFLSRITQWLNTQNITVEQLMLLLDKISPAA
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Known secondary structure (DSSP) TT

TTSSS
SS
BSSS

TT








 .........640.........650.........660.........670.........680.........690.........700
Sequence PTKEMQVLLDLLRNGGIDKTNTKTLYTTMAPVITAAMQLDITESGEALLRWLDNNHPAGILTTSEARKLI
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Known secondary structure (DSSP)

SSS


SSTTTT
S
S
STT


 .........710.........720.........730.........740.........750.........760.........770
Sequence IKKGQTAGDKEKLAAWCQALAQRVLVIRTFTLSNAELQTLSQGAPAGTITELYNISDFHNLINRCGEQAG
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Known secondary structure (DSSP) S
S


SSSST

TTT


SSGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence TVLDALQSGTLTVKILAQALNLSEEVITQALTLAGQKPELTTWAQLAVLPPRLDLADTLHITPKDITTLL
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Known secondary structure (DSSP) TT


TS
TTTTT
TT


SGGGTSSTTS
GGGS
 .........850.........860.........870.........880.........890.........900.........910
Sequence TVSENVRPFYTDLSALAGLLQAGLNEQQTKQLQNQSEPRRNEALSGEYRSLVMNNPVADRDDIWRNLLVD
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Known secondary structure (DSSP) TT
SS

TS
TSS
TTS
SSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence GKVSAEITTTLLADAIAGIQLYINRTIAGDEPGADSDALERQFFKDWDACNKRYSTWAGVSQLVYYPENF
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Known secondary structure (DSSP) SS

TT
TTSSTT

SST




TSS
GGGT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VDPTLRTGQTGMMNTMLEQLSQSELNKDTLENGFRQYLTAFEQVADLKVVSGYHDTVNINQGNTWFIGTS
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Known secondary structure (DSSP)

SS

TT

T
SS


S
SSSSTTSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence QTEPKKYYWRKADHSKCQNGRFAANAWSDWKEITCAVNPYGDMVRPVIFHSRLYLLWIEKQVQKDNTGKD
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Known secondary structure (DSSP) SSSS


GGGTT
GGGB




S



SSS
SSS



SSS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence TASFTLKLTHVKYDGSWASPFSYDITEKNISGWKKTGLYCAASQEDNSLLIAWYQIEKETQPNSFGLHIQ
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Known secondary structure (DSSP)
B
TTS
B






SSSTTS

S
BSSS

SSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PDMSCKKEPNIAGILATVTHQLDTETTVRVNTLLNRISSFEFTLEKQEGNKEIDLVISHGDYTVKTENSI
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Known secondary structure (DSSP) TT



S

TTTGGGTTTSS

SS
B

B

B

S



S


STTS


SS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SALILNPTAYINITPYKLFSDIPIAQVKTISSDDISMEIELNSTKFETITGSDVGLRPPLYPTVSRETLA
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Known secondary structure (DSSP)



S

SS


S








S

TT

SS


TTTT





S


STT



 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence FPFGKLSITIPAGADINNLDCTIKVRFKNTDVLAATTTYKLVIKKTDPVQKVISLYTTPDGAQYMEWDGY
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Known secondary structure (DSSP)





S

TTTS





STT












TTS
TT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence RTRLNTLFTRQLIERANNGIDAILSPETQYLPEPKPGQGTYVTLILKPYDKNTHGTNRAFTIYYSNDATG
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Known secondary structure (DSSP)
S
SSTTTGGG
SST


SSS



TTTT
S
S

STT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence SGKFPVYSGSLSVTDNTEVKLFIPLIKPQDTLYLNATYQKEATKQILLFRTDNNPEGWTLDKSVNNGTFA
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Known secondary structure (DSSP) S



SSS










B
SS
B



B


SSS
SS


TT
SSS



S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence GLAENGVTGLLQSGEPMDFSGANALYFWELFYYTPMMVATRLLQEQNFTEANRWLSYIWQPAASGAGDWR
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Known secondary structure (DSSP) SS
SS






SS

SSSTTTTTT
TTT
SSSS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence VRPLKEDTSWNADPLDSVDPDAVAQNDPMHYKVSTLMKLLDLLIARGDKAYRMQERDTLNEAKMWYMQAL
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Known secondary structure (DSSP) STT



S

TTSS
STS
S
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence GLLGDKPVSIFSNGWENPSLSNAADKTQAKQFHDEISRIRSGGLLPDVANTLTGLFRPQQNEKLLGYWQM
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Known secondary structure (DSSP)
S





S
S



BT
TT
S






SS
SSB
B

 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LEMRLFNLRNNLSIDGQPLSLPVFAAPADPAALLSAAAAASGGSKPLPSADIPAMRFPQALDSARSLTGQ
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Known secondary structure (DSSP) TTB
TTS
BSS






















B








SB
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LMQFGSTLLGLIERRDAEAMSELLQNQAGELMLSSLRMQEQALTELDAEKKILEQSRAGAQSRVDSYRAL
Predicted secondary structure
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Known secondary structure (DSSP)
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence YDENVSAEEKRTMDLYLSSAILSTSIGVLDMAAAAADMAPNIFGVAVGGSRWGGIPKAIGAGMSLAASAT
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Known secondary structure (DSSP) S
S
TTTTTS

B
SSS
B


TT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence KITADNISQSEAWRRRRQEWEIQKNNAESEIRQIDAQLEALAVRRTATEMQREHMEIQQAQTQAQLEFLQ
Predicted secondary structure
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Known secondary structure (DSSP)
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence RKFSNKALYSWLRGRLASIYYRFYDLTAARCMMAEKAYAWQTNDTATRYIKSGAWQSNNAGLMAGESLLL
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Known secondary structure (DSSP) SSSSS


S


S
S
S
BTTTTTTT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence NLAEMEQAWLKRDSRSLEVTRTVSLAAVYRTDNVTLAEGIADLLKGNGSGNIPTADNQLHAAFNLKALNI
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Known secondary structure (DSSP)



TTT

TTS






SS



SSS

BGGGG
S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence KDDYPEALGTTRRIKQISVTLPALVEPYQDMRAIFRYGGNSLPAGCKAIALSHGINDDGLFRLDFNDGRW
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Known secondary structure (DSSP) TTTS
TTT
S






SS




SSS
S
TTTTSSS
SSSS

TT
SB
 .........2250.........2260.........2270.........2280.....
Sequence LPFEGIPVDDDNSLTLSFPDATGEKQKPLLLSLTDIIIHIRYTIC
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Known secondary structure (DSSP)
TT
S
BSSS

B
S

SSST





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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