Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6rutD_

Fold library idPDB HeaderMoleculeTitle
c6rutD_2.65PDB header: sugar binding proteinChain: D: PDB Molecule: adhesin p1;


Added to library: Sat Jun 27 08:37:04 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QAVDETLTPWTWNNNNFSSLKITGENPGSFGLVRSQNDNLNISSVTKDNLKYLNAVEKYLDGQQNFAIRR
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)



TT



TTT



SSS






GGGS


TT

 .........80.........90.........100.........110.........120.........130.........140
Sequence YDNNGRALYDINLAKMENPSTVQRGLNGEPIFDPFKGFGLTGNAPTDWNEIKGKVPVEVVQSPHSPNLYF
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)
TTS



TTT

S

BB
B
SSS
B
TTT
B
S


TTTT

SSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VLLVPKVALEYHNLNNQVVKESLEVSFNPTQRLQKDSPVKDSSKQGEKLSETTASSMSSGMATSTRAKAL
Predicted secondary structure






















































SS confidence





































































Known secondary structure (DSSP)
GGGS
TTTS

SS




GGGGS





STTGGGS

B
S



TT



S


 .........220.........230.........240.........250.........260.........270.........280
Sequence KVEVERGSQSDSLLKNDFAKKPLKHKNSSGEVKLEAEKEFTEAWKPLLTTDQIAREKGMGATVVSFYDAP
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)

S
TT

STTS




BSSSB
S


TT



SS

TTSS
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence YSENHTAFGLVDHIDPKKMVENYPPSWKTPKWNHHGIWDYNARNLLLQTTGFFNPRRHPEWFDEGQAKAD
Predicted secondary structure























































SS confidence





































































Known secondary structure (DSSP) TSSB

TTTS
GGGG
TT

TTTTT


SSS
TTT
GGG
TTGGGG
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence NTSPGFKVGDTDHKKDGFKKNSSSPIALPFEAYFANIGNMVAIGNSVFIFGGNGHATKMFTTNPLSIGVF
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) SS

SB

S
SSGGGTT
B









T


TT



STTT

TT



B
 .........430.........440.........450.........460.........470.........480.........490
Sequence RIKYTDNFSKSSVTGWPYAVLFGGLINPQTNGLKDLPLGTNRWFEYVPRMAVSGVKWVGNQLVLAGTLTM
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) TTTTTTT

GGG
SS

S
S



SS





TT

 .........500.........510.........520.........530.........540.........550.........560
Sequence GDTATVPRLKYDQLEKHLNLVAQGQGLLREDLQIFTPYGWANRPDIPVGAWLQDEMGSKFGPHYFLNNPD
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP) B

TT
S
B
GGGGGG
TTSS


S
B


TTBBS
TT

GGGTTSSSSSTT

SSS
B

TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence IQDNVNNDTVEALISSYKNTDKLKHVYPYRYSGLYAWQLFNWSNKLTNTPLSANFVNENSYAPNSLFAAI
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) S




TTTS

BTT
S





S



SSTT

S



B
SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence LNEDLLTGLSDKIFYGKENEFAENEADRFNQLLSLNPNPNTNWARYLNVVQRFTTGPNLDSSTFDQFLDF
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
S
SS



GGGS

SST

S




TT

TTTTS

SSSS

T
 .........710.........720.........730.........740.........750.........760.........770
Sequence LPWIGNGKPFSNSPSSSTPLPTFSNINVGVKSMITQHLNKENTRWVFIPNFSPDIWTGAGYRVQSANQKN
Predicted secondary structure




















































SS confidence





































































Known secondary structure (DSSP) STTTTTT









SS

TTSS
GGGSBT
SS
TTTS
SSS



SSB

SSSS

S
 .........780.........790.........800.........810.........820.........830.........840
Sequence GIPFEQVKPSNNSTPFDPNSDDNKVTPSGGSSKPTTYPALPNSISPTSDWINALTFTNKNNPQRNQLLLR
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP)
TTS



SSS



TTSGGG
TTS

SS
S
SB
STT


SS
STT



 .........850.........860.........870.........880.........890.........900.........910
Sequence SLLGTIPVLINKSGDSNDQFNKDSEQKWDKTETNEGNLPGFGEVNGLYNAALLHTYGFFGTNTNSTDPKI
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) T


SB
SSTTS




SS
TTSGGG


SSSSBTTS
TTSSSSSS
SS



 .........920.........930.........940.........950.........960.........970.........980
Sequence GFKADSSSSSSSTLVGSGLNWTSQDVGNLVVINDTSFGFQLGGWFITFTDFIRPRTGYLGITLSSLQDQT
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) B



SSS


S



TT
B



SSS
TTSSSSS

TTB




 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence IIWADQPWTSFKGSYLDSDGTPKSLWDPTALKSLPNNPTLSPSFQLYQPNKVKAYQTTNTYNKLIEPVDA
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP) T
SSGGGS
TTS

GGG










TT









SSS
TTS


B


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TSAATNMTSLLKLLTTKNIKAKLGKGTASNNGGGVSQTINTITTTGNISEGLKEETSIQAETLKKFFDSK
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TT
GGG
TTSTT
SS










TTTTB
TTTS

SSS
TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence QNNKSEIGIGDSTFTKMDGKLTGVVSTPLVNLINGQGATSDSDTEKISFKPGNQIDFNRLFTLPVTELFD
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP) SS
GGGTT

SS




SS
TT





SGGGS


TTTS

TTTTSS
GGGGB
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence PNTMFVYDQYVPLLVNLPSGFDQASIRLKVISYSVENQTLGVRLEFKDPQTQQFIPVLNASSTGPQTVFQ
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTT
BB
TTTGGGT

TT

GGGTTTT
SSS
S
TTSSSS
S
 .....
Sequence PFNQW
Predicted secondary structure


SS confidence




Known secondary structure (DSSP) SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D