PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6rqlA_

Fold library id	PDB Header	Molecule	Title
c6rqlA_	2.90	PDB header: transcription	Chain: A: PDB Molecule: dna-directed rna polymerase i subunit rpa190;

Links to external resources
Added to library: Sat Dec 14 09:03:11 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I S K P V G S E I T S V D F G I L T A K I R N L S A K Q I T N P T V L D N L G H P V S G G L Y D L A L G A F L R N L C S T C G L D E K F C P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S T
S B
T T S
B
T T S T T
T T S S
T T
T T T
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G H Q G H I E L P V P C Y N P L F F N Q L Y I Y L R A S C L F C H H F R L K S V E V H R Y A C K L R L L Q Y G L I D E S Y K L D E I T L D I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S T T T T T T T T S S
T T T
S G G G T S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S S T L L N E L K S K R S E Y V D M A I A K A L S D G R T T E R G S F T A T V N D E R K K L V H E F H K K L L S R G K C D N C G M F S P K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T
T T S
S S
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R K D G F T K I F E T A L N E K Q I T N N R V K G F I K T G S T Y I L S T E V K N I L D T V F R K E Q C V L Q Y V F H S R P N L S R K L V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T S
T T
T T T T S
S S
S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A D S F F M D V L V V P P T R F R L P S K L G E E V H E N S Q N Q L L S K V L T T S L L I R D L N D D L S K L R V I F S R L M N A F V T I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S
G G G G
B T T B
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence N D V N A F I D S T K A Q S G K V P I P G V K Q A L E K K E G L F R K H M M G K R V N Y A A R S V I S P D P N I E T N E I G V P P V F A V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S S
S S T T S S S S S S S T T T S S S S
S S
S S S
T T
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence L T Y P E P V T A Y N I A E L R Q A V I N G P D K W P G A T Q I Q N E D G S L V S L I G M S V E Q R K A L A N Q L L T P S S N V S T H T L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T T S S S
T T S
S S
T T T T
S
S T T S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence K K V Y R H I K N R D V V L M N R Q P T L H K A S M M G H K V R V L P N E K T L R L H Y A N T G A Y N A D F D G D E M N M H F P Q N E N A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S G G G
S S
S
G G G T T T T T
S S S
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence A E A L N L A N T D S Q Y L T P T S G S P V R G L I Q D H I S A G V W L T S K D S F F T R E Q Y Q Q Y I Y G C I R P E D G H T T R S K I V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S B S S T T S B
T T T S
B
S T T S S S S
T T T T
S S S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L P P T I F K P Y P L W T G K Q I I T T V L L N V T P P D M P G I N L I S K N K I K N E Y W G K G S L E N E V L F K D G A L L C G I L D K S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B
S S S
B T S
S S S
S S
G G G T
T T
T T S S S
S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence Q Y G A S K Y G I V H S L H E V Y G P E V A A K V L S V L G R L F T N Y I T A T A F T C G M D D L R L T A E G N K W R T D I L K T S V D T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T S T
S
S T T S
B
T T T T S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence R E A A A E V T N L D K D T P A D D P E L L K R L Q E I L R D N N K S G I L D A V T S S K V N A I T S Q V V S K C V P D G T M K K F P C N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
T T S
S S S S S S T T T S B S S
T T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence M Q A M A L S G A K G S N V N V S Q I M C L L G Q Q A L E G R R V P V M V S G K T L P S F K P Y E T D A M A G G Y V K G R F Y S G I K P Q E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
T
S T T T
T T S
S S T T S
T T
T T T T T
B T T T B

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence Y Y F H C M A G R E G L I D T A V K T S R S G Y L Q R C L T K Q L E G V H V S Y D N S I R D A D G T L V Q F M Y G G D A I D I T K E S H M T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T T G G G T T S S T T S
T T S
T T S
S S S T T T T B
G G G
S S S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence Q F E F C L D N Y Y A L L K K Y N P S A L I E H L D V E S A L K Y S K K T L K Y R K K H S K E P H Y K Q S V K Y D P V L A K Y N P A K Y L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T T T G G G S B
S S S S
G G G
S S
G G G T S
T T T B T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence S V S E N F Q D K L E S F L D K N S K G V N E K K F R A L M Q L K Y M R S L I N P G E A V G I I A S Q S V G E P S T Q M T L N T F N V T L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S T T B
T T
T G G G S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence I P R L R E I V M T A S A A I K T P Q M T L P I W N D V S D E Q A D T F C K S I S K V L L S E V I D K V I V T E T T G A R S Y V I H M R F F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T B T T
S S
S S
B
S S S
S
G G G G

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence D N N E Y S E E Y D V S K E E L Q N V I S N Q F I H L L E A A I V K E I K K Q K R T T G P D I G V A V P R L Q T D V A N S S S N S K R L E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
T T
S S
S S S S S S
T T G G G

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence D N D E E Q S H K K T K Q A V S Y D E P D E D E I E T M R E A E K S S D E E G I D S D K E S D S D S E V E A N N N M N K V Q R D R Q S A I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T T T T S S
S S
S
S
S
S S S S
S S
S

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence S H H R F I T K Y N F D D E S G K W C E F K L E L A A D T E K L L M V N I V E E I C R K S I I R Q I P H I D R C V H P E P E N G K R V L V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S
T T T S
B
S S
T T
T T
B T T B

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . . . . 1430 . . . . . . . . . 1440 . . . . . . . . . 1450 . . . . . . . . . 1460 . . . . . . . . . 1470

Sequence E G V N F Q A M W D Q E A F I D V D G I T S N D V A A V L K T Y G V E A A R N T I V N E I N N V F S R Y A I S V S F R H L D L I A D M M T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T B
T T S
S
T T
T T

. . . . . . . . . 1480 . . . . . . . . . 1490 . . . . . . . . . 1500 . . . . . . . . . 1510 . . . . . . . . . 1520 . . . . . . . . . 1530 . . . . . . . . . 1540

Sequence Q G T Y L A F N R Q G M E T S T S S F M K M S Y E T T C Q F L T K A V L D N E R E Q L D S P S A R I V V G K L N N V G T G S F D V L A K V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
B S T S
S
S
T T
S T
S S T T S S

. .

Sequence N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	S	K	P	V	G	S	E	I	T	S	V	D	F	G	I	L	T	A	K	I	R	N	L	S	A	K	Q	I	T	N	P	T	V	L	D	N	L	G	H	P	V	S	G	G	L	Y	D	L	A	L	G	A	F	L	R	N	L	C	S	T	C	G	L	D	E	K	F	C	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S				S												S	T														S	B		T	T	S		B		T	T	S	T	T		T	T	S	S			T	T				T	T	T				T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	H	Q	G	H	I	E	L	P	V	P	C	Y	N	P	L	F	F	N	Q	L	Y	I	Y	L	R	A	S	C	L	F	C	H	H	F	R	L	K	S	V	E	V	H	R	Y	A	C	K	L	R	L	L	Q	Y	G	L	I	D	E	S	Y	K	L	D	E	I	T	L	D	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S	S	S	T	T	T						T			T	T	T	T			S	S																T	T	T		S	G	G	G	T	S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	S	T	L	L	N	E	L	K	S	K	R	S	E	Y	V	D	M	A	I	A	K	A	L	S	D	G	R	T	T	E	R	G	S	F	T	A	T	V	N	D	E	R	K	K	L	V	H	E	F	H	K	K	L	L	S	R	G	K	C	D	N	C	G	M	F	S	P	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T	S			T	T																						T	T	S		S	S		S	S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	K	D	G	F	T	K	I	F	E	T	A	L	N	E	K	Q	I	T	N	N	R	V	K	G	F	I	K	T	G	S	T	Y	I	L	S	T	E	V	K	N	I	L	D	T	V	F	R	K	E	Q	C	V	L	Q	Y	V	F	H	S	R	P	N	L	S	R	K	L	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S									T	T	T								S					T	T																			T					T	T	T	S		S	S			S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	D	S	F	F	M	D	V	L	V	V	P	P	T	R	F	R	L	P	S	K	L	G	E	E	V	H	E	N	S	Q	N	Q	L	L	S	K	V	L	T	T	S	L	L	I	R	D	L	N	D	D	L	S	K	L	R	V	I	F	S	R	L	M	N	A	F	V	T	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	S										G	G	G	G					B	T	T	B																												T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	N	D	V	N	A	F	I	D	S	T	K	A	Q	S	G	K	V	P	I	P	G	V	K	Q	A	L	E	K	K	E	G	L	F	R	K	H	M	M	G	K	R	V	N	Y	A	A	R	S	V	I	S	P	D	P	N	I	E	T	N	E	I	G	V	P	P	V	F	A	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	T	T					S	S					S	S	T	T	S	S	S	S	S	S	S	T	T	T	S	S	S	S				S	S										S	S	S		T	T										T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	L	T	Y	P	E	P	V	T	A	Y	N	I	A	E	L	R	Q	A	V	I	N	G	P	D	K	W	P	G	A	T	Q	I	Q	N	E	D	G	S	L	V	S	L	I	G	M	S	V	E	Q	R	K	A	L	A	N	Q	L	L	T	P	S	S	N	V	S	T	H	T	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	S											T	T	T	S	S	S								T	T	S						S	S											T	T	T	T				S		S	T	T	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	K	K	V	Y	R	H	I	K	N	R	D	V	V	L	M	N	R	Q	P	T	L	H	K	A	S	M	M	G	H	K	V	R	V	L	P	N	E	K	T	L	R	L	H	Y	A	N	T	G	A	Y	N	A	D	F	D	G	D	E	M	N	M	H	F	P	Q	N	E	N	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T								S	S			S	G	G	G										S	S			S					G	G	G	T	T	T	T	T			S	S	S										S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	A	E	A	L	N	L	A	N	T	D	S	Q	Y	L	T	P	T	S	G	S	P	V	R	G	L	I	Q	D	H	I	S	A	G	V	W	L	T	S	K	D	S	F	F	T	R	E	Q	Y	Q	Q	Y	I	Y	G	C	I	R	P	E	D	G	H	T	T	R	S	K	I	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	S	B	S	S	T	T	S	B		T	T	T	S		B						S	T	T								S	S	S	S																		T	T	T	T			S	S	S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	P	P	T	I	F	K	P	Y	P	L	W	T	G	K	Q	I	I	T	T	V	L	L	N	V	T	P	P	D	M	P	G	I	N	L	I	S	K	N	K	I	K	N	E	Y	W	G	K	G	S	L	E	N	E	V	L	F	K	D	G	A	L	L	C	G	I	L	D	K	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	B		S	S	S		B			T												S		S	S	S										S	S		G	G	G	T		T	T			T	T					S	S	S					S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	Q	Y	G	A	S	K	Y	G	I	V	H	S	L	H	E	V	Y	G	P	E	V	A	A	K	V	L	S	V	L	G	R	L	F	T	N	Y	I	T	A	T	A	F	T	C	G	M	D	D	L	R	L	T	A	E	G	N	K	W	R	T	D	I	L	K	T	S	V	D	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S		T	T	S									T																							S						S	T	T	S		B														T	T	T	T	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	R	E	A	A	A	E	V	T	N	L	D	K	D	T	P	A	D	D	P	E	L	L	K	R	L	Q	E	I	L	R	D	N	N	K	S	G	I	L	D	A	V	T	S	S	K	V	N	A	I	T	S	Q	V	V	S	K	C	V	P	D	G	T	M	K	K	F	P	C	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T			S				T	T											T	T	S		S	S	S	S	S	S																					T	T	T	S	B	S	S		T	T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	M	Q	A	M	A	L	S	G	A	K	G	S	N	V	N	V	S	Q	I	M	C	L	L	G	Q	Q	A	L	E	G	R	R	V	P	V	M	V	S	G	K	T	L	P	S	F	K	P	Y	E	T	D	A	M	A	G	G	Y	V	K	G	R	F	Y	S	G	I	K	P	Q	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S	S	S											T							S	T	T	T						T	T	S		S	S	T	T	S		T	T				T	T	T	T	T					B	T	T	T	B
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	Y	Y	F	H	C	M	A	G	R	E	G	L	I	D	T	A	V	K	T	S	R	S	G	Y	L	Q	R	C	L	T	K	Q	L	E	G	V	H	V	S	Y	D	N	S	I	R	D	A	D	G	T	L	V	Q	F	M	Y	G	G	D	A	I	D	I	T	K	E	S	H	M	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T	T	T	T	T	T	G	G	G	T	T	S	S											T	T	S					T	T	S					T	T	S					S	S	S	T	T	T	T	B		G	G	G		S	S	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	Q	F	E	F	C	L	D	N	Y	Y	A	L	L	K	K	Y	N	P	S	A	L	I	E	H	L	D	V	E	S	A	L	K	Y	S	K	K	T	L	K	Y	R	K	K	H	S	K	E	P	H	Y	K	Q	S	V	K	Y	D	P	V	L	A	K	Y	N	P	A	K	Y	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T						T	T	S			T	T	T	G	G	G	S	B																		S	S	S	S		G	G	G				S	S			G	G	G	T	S		T	T	T	B	T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	S	V	S	E	N	F	Q	D	K	L	E	S	F	L	D	K	N	S	K	G	V	N	E	K	K	F	R	A	L	M	Q	L	K	Y	M	R	S	L	I	N	P	G	E	A	V	G	I	I	A	S	Q	S	V	G	E	P	S	T	Q	M	T	L	N	T	F	N	V	T	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S							S													T	T	B			T	T													T	G	G	G	S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	I	P	R	L	R	E	I	V	M	T	A	S	A	A	I	K	T	P	Q	M	T	L	P	I	W	N	D	V	S	D	E	Q	A	D	T	F	C	K	S	I	S	K	V	L	L	S	E	V	I	D	K	V	I	V	T	E	T	T	G	A	R	S	Y	V	I	H	M	R	F	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	B	T	T		S	S		S	S							B		S	S	S													S				G	G	G	G
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	D	N	N	E	Y	S	E	E	Y	D	V	S	K	E	E	L	Q	N	V	I	S	N	Q	F	I	H	L	L	E	A	A	I	V	K	E	I	K	K	Q	K	R	T	T	G	P	D	I	G	V	A	V	P	R	L	Q	T	D	V	A	N	S	S	S	N	S	K	R	L	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S												T	T	T																								T	T						S	S			S	S	S	S	S	S		T	T	G	G	G
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	D	N	D	E	E	Q	S	H	K	K	T	K	Q	A	V	S	Y	D	E	P	D	E	D	E	I	E	T	M	R	E	A	E	K	S	S	D	E	E	G	I	D	S	D	K	E	S	D	S	D	S	E	V	E	A	N	N	N	M	N	K	V	Q	R	D	R	Q	S	A	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T	T	T	T	T	T	T	S	S						S	S											S		S		S		S	S	S	S		S	S							S
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	S	H	H	R	F	I	T	K	Y	N	F	D	D	E	S	G	K	W	C	E	F	K	L	E	L	A	A	D	T	E	K	L	L	M	V	N	I	V	E	E	I	C	R	K	S	I	I	R	Q	I	P	H	I	D	R	C	V	H	P	E	P	E	N	G	K	R	V	L	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S		S						T	T	T	S								B			S	S															T	T							T	T										B	T	T	B
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470
Sequence	E	G	V	N	F	Q	A	M	W	D	Q	E	A	F	I	D	V	D	G	I	T	S	N	D	V	A	A	V	L	K	T	Y	G	V	E	A	A	R	N	T	I	V	N	E	I	N	N	V	F	S	R	Y	A	I	S	V	S	F	R	H	L	D	L	I	A	D	M	M	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T		T	T	T	B		T	T	S				S																													T	T																T	T
	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540
Sequence	Q	G	T	Y	L	A	F	N	R	Q	G	M	E	T	S	T	S	S	F	M	K	M	S	Y	E	T	T	C	Q	F	L	T	K	A	V	L	D	N	E	R	E	Q	L	D	S	P	S	A	R	I	V	V	G	K	L	N	N	V	G	T	G	S	F	D	V	L	A	K	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S				B	S					T	S		S									S												T	T							S								T					S	S	T	T	S	S
	.	.
Sequence	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)