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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6rlaA_

Fold library idPDB HeaderMoleculeTitle
c6rlaA_3.90PDB header: motor proteinChain: A: PDB Molecule: o6-alkylguanine-dna alkyltransferase mutant,dync2h1 variant


Added to library: Sat Aug 31 09:16:09 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence QGEVTIREALRELDLWGVGAVFTLIDYEDSQSRTMKLIKDWKDIVNQVGDNRCLLQSLKDSPYYKGFEDK
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Known secondary structure (DSSP)


B



SSS



TTSGGGGGT
 .........80.........90.........100.........110.........120.........130.........140
Sequence VSIWERKLAELDEYLQNLNHIQRKWVYLEPIFGRGALPKEQTRFNRVDEDFRSIMTDIKKDNRVTTLTTH
Predicted secondary structure



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Known secondary structure (DSSP) S



BGGGTTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence AGIRNSLLTILDQLQRCQRSLNEFLEEKRSAFPRFYFIGDDDLLEILGQSTNPSVIQSHLKKLFAGINSV
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Known secondary structure (DSSP) S
SGGGGSS

SS
STTTSSS


B
 .........220.........230.........240.........250.........260.........270.........280
Sequence CFDEKSKHITAMKSLEGEVVPFKNKVPLSNNVETWLNDLALEMKKTLEQLLKECVTTGRSSQGAVDPSLF
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Known secondary structure (DSSP)


TTSS

SS




SSSTSSS



TTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PSQILCLAEQIKFTEDVENAIKDHSLHQIETQLVNKLEQYTNIDTSSEDPGNTESGILELKLKALILDII
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Known secondary structure (DSSP)



TT
S
SS


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence HNIDVVKQLNQIQVHTTEDWAWKKQLRFYMKSDHTCCVQMVDSEFQYTYEYQGNASKLVYTPLTDKCYLT
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Known secondary structure (DSSP) T

STTSTS

TTS

SS
B








S






T
 .........430.........440.........450.........460.........470.........480.........490
Sequence LTQAMKMGLGGNPYGPAGTGKTESVKALGGLLGRQVLVFNCDEGIDVKSMGRIFVGLVKCGAWGCFDEFN
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Known secondary structure (DSSP) TT



SSSSST





TT

T


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence RLEESVLSAVSMQIQTIQDALKNHRTVCELLGKEVEVNSNSGIFITMNPAGKGYGGRQKLPDNLKQLFRP
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Known secondary structure (DSSP) SS
TT
SB

SSSS

B

TT






SSS
S




TTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VAMSHPDNELIAEVILYSEGFKDAKVLSRKLVAIFNLSRELLTPQQHYDWGLRALKTVLRGSGNLLRQLN
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Known secondary structure (DSSP)




STT
S
S


TT


S
 .........640.........650.........660.........670.........680.........690.........700
Sequence KSGTTQNANESHIVVQALRLNTMSKFTFTDCTRFDALIKDVFPGIELKEVEYDELSAALKQVFEEANYEI
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Known secondary structure (DSSP) SS


STTT

SSS








TT


 .........710.........720.........730.........740.........750.........760.........770
Sequence IPNQIKKALELYEQLCQRMGVVIVGPSGAGKSTLWRMLRAALCKTGKVVKQYTMNPKAMPRYQLLGHIDM
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Known secondary structure (DSSP)

S


TTSSSSTTSS


TTTS
T
T
 .........780.........790.........800.........810.........820.........830.........840
Sequence DTREWSDGVLTNSARQVVREPQDVSSWIICDGDIDPEWIESLNSVLDDNRLLTMPSGERIQFGPNVNFVF
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Known secondary structure (DSSP) TTT

S
SS


S


GGGTTTSSSS

TTS


S

 .........850.........860.........870.........880.........890.........900.........910
Sequence ETHDLSCASPATISRMGMIFLSDEETDLNSLIKSWLRNQPAEYRNNLENWIGDYFEKALQWVLKQNDYVV
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Known secondary structure (DSSP)
S

TT

TTS


SSS

STS
SSS


SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence ETSLVGTVMNGLSHLHGCRDHDEFIINLIRGLGGNLNMKSRLEFTKEVFHWARESPPDFHKPMDTYYDST
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Known secondary structure (DSSP)


TT
TT

STTSS
TSS


S

SSTT




TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RGRLATYVLKKPEDLTADDFSNGLTLPVIQTPDMQRGLDYFKPWLSSDTKQPFILVGPEGCGKGMLLRYA
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Known secondary structure (DSSP) T







B





SSTTSSSSS



B
TTTSSTT




SSSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FSQLRSTQIATVHCSAQTTSRHLLQKLSQTCMVISTNTGRVYRPKDCERLVLYLKDINLPKLDKWGTSTL
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Known secondary structure (DSSP) T
SS


TT

TS

SSS
TT
S

SSSS


SSS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VAFLQQVLTYQGFYDENLEWVGLENIQIVASMSAGGRLGRHKLTTRFTSIVRLCSIDYPEREQLQTIYGA
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Known secondary structure (DSSP) STTT
S

S
STT




S




 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YLEPVLHKNLKNHSIWGSSSKIYLLAGSMVQVYEQVRAKFTVDDYSHYFFTPCILTQWVLGLFRYDLEGG
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Known secondary structure (DSSP) TTSSTTSSSS
ST

TTT
TT



TGGGSB



S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SSNHPLDYVLEIVAYEARRLFRDKIVGAKELHLFDIILTSVFQGDWGSDILDNMSDSFYVTWGARHNSGA
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Known secondary structure (DSSP) S



GGG

SSSS
SS
S
TT


BSSS
TT



 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence PGQPLPPHGKPLGKLNSTDLKDVIKKGLIHYGRDNQNLDILLFHEVLEYMSRIDRVLSFPGGSLLLAGRS
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Known secondary structure (DSSP)


S

TT
S
BB


SS







TSTT


S
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence GVGRRTITSLVSHMHGAVLFSPKISRGYELKQFKNDLKHVLQLAGIEAQQVVLLLEDYQFVHPTFLEMIN
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Known secondary structure (DSSP) SS
STT





SS

SS


GGG

STT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence SLLSSGEVPGLYTLEELEPLLLPLKDQASQDGFFGPVFNYFTYRIQQNLHIVLIMDSANSNFMINCESNP
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Known secondary structure (DSSP) TSS
TT
S
STTTGGG


S
STT
GGGTS
G
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence ALHKKCQVLWMEGWSNSSMKKIPEMLFSEVDPDFLKSFLLIHESCKAYGATPSQYMTFLHVYSAISSSKK
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Known secondary structure (DSSP) GGGTTS




TT


GGG


 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence KELLKRQSHLQAGVSKLNEAKALVDELNRKAGEQSVLLETIKAAEVLINQLDREHKRWNAQVVEITEELA
Predicted secondary structure
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Known secondary structure (DSSP) TT


STTT
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence TLPKRAQLAAAFITYLSAAPESLRKTCLEEWTKSAGLEKFDLRRFLCTESEQLIWKSEGLPSDDLSIENA
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Known secondary structure (DSSP) STTSS
T

S

S

TTT


S
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence LVILQSRVCPFLIDPSSQATEWLKTHLKDSRLEVINQQDSNFITALELAVRFGKTLIIQEMDGVEPVLYP
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Known secondary structure (DSSP) TT

SS
SSTT
SS

SS
TTTT

S

STT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LLRRDLVAQGPRYVVQIGDKIIDYNEEFRLFLSTRNPNPFIPPDAASIVTEVNFTTTRSGLRGQLLALTI
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Known secondary structure (DSSP) TT

TTTT

TT
S
SSS


SSTTSS



 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence QHEKPDLEEQKTKLLQQEEDKKIQLAKLEESLLETLATSQGNILENKDLIESLNQTKASSALIQESLKES
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Known secondary structure (DSSP)
GGGSSSS
TTTST
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence YKLQISLDQERDAYLPLAESASKMYFIISDLSKINNMYRFSLAAFLRLFQRALQNKQDSENTEQRIQSLI
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Known secondary structure (DSSP) TTSTTTTTSTT



STT


S
S
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence SSLQHMVYEYICRCLFKADQLMFALHFVRGMHPELFQENEWDTFTGVDQLPSWIDQERSWAVATLKIALP
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Known secondary structure (DSSP) TTS
TTS
TTSS
SS
TT


S

SS

 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence SLYQTLCFEDAALWRTYYNNSMCEQEFPSILAKKVSLFQQILVVQVLRPDRLQSAMALFACKTLGLKEVS
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Known secondary structure (DSSP)
TT

STT
SSTTS


GGGTTTS

SSS

S
SS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence PLPLNLKRLYKETLEIEPILIIISPGADPSQELQELANAERSGECYHQVAMGQGQADLAIQMLKECARNG
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Known secondary structure (DSSP)




TTTTTTT

TTS


TT




S





TT

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence DWLCLKNLHLVVSWLPVLEKELNTLQPKDTFRLWLTAEVHPNFTPILLQSSLKITYESPPGLKKNLMRTY
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Known secondary structure (DSSP)


TTT
TTT



SS




SS

TS



SS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence ESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLSDLRAGYNIIDRLFDGAKDVQ
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Known secondary structure (DSSP) S


SS
GGGSTTTT
SS




SSSS


 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence WEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFIFPYSVSLPQSCSILDYRAVIEKIPEDDKPSFFGLP
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Known secondary structure (DSSP) TTGGG

ST



TTT



SS
S
SS

GGGTT

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence ANIARSSQRMISSQVISQLRILGRDREIWSNELSPVLNLWKKLNQNSNLIHQKVPPPNDRQGSPILSFII
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Known secondary structure (DSSP) STT

TTSSSSS
TTTTT








SSTT
 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence LEQFNAIRLVQSVHQSLAALSKVIRGTTLLSSEVQKLASALLNQKCPLAWQSKWEGPEDPLQYLRGLVAR
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Known secondary structure (DSSP) TTSSS



STT






SS
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence ALAIQNWVDKAEKQALLSETLDLSELFHPDTFLNALRQETARAVGRSVDSLKFVASWKGRLQEAKLQIKI
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Known secondary structure (DSSP) TTS
TTTS
GGG
SSTS
GGGSSS

SSSS

 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence SGLLLEGCSFDGNQLSENQLDSPSVSSVLPCFMGWIPQDACGPYSPDECISLPVYTSAERDRVVTNIDVP
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Known secondary structure (DSSP)

SSTT


TT

S



TTS

SS
GGG
BSSTT





 .........2740.........2750
Sequence CGGNQDQWIQCGAALFLKNQ
Predicted secondary structure







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Known secondary structure (DSSP)

S

TT
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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