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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6rl1A_

Fold library idPDB HeaderMoleculeTitle
c6rl1A_1.70PDB header: sugar binding proteinChain: A: PDB Molecule: arabino-oligosaccharids-binding protein;


Added to library: Sat Apr 18 09:05:20 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KIELTFMFRGQPQEQTAYKNVVKKFEEKHPNVKVNIVVTSPDQYATKLRAAIAGRKIPDVFYFNPGELRA
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Known secondary structure (DSSP)


STT
TTTTT


S
GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence YVNSNVLLDITKYVENSKGVNLQDIWEKGVNKYRFDGEKVGQGNLYGLPKDLGPFALGYNKTMFEKAGIP
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Known secondary structure (DSSP) TT
B


SSS

GGGB
TT
SS






T

 .........150.........160.........170.........180.........190.........200.........210
Sequence LPDKDKPYTWQEFIDVCKKLTKDTNGDGKLDQWGTGLNATWTLQGFVWSNGADWIDESKTKVTVDDPKFI
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Known secondary structure (DSSP)


SSS

B
B
SSSSSS

BBS



TT

SB
TTS
SB
TTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EALQFFADMQNKYKVTPSIAEAQTLDTYQRWLRGQLGFFPVGPWDLAAFDQQIKFEYDLIPWPAGSTGKP
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Known secondary structure (DSSP) TS

S

S
TT
BS
GGG

S



B
TT
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence ATWVGSLGIGVSSMTKHPKEAVELALYLSADPEGQKALVDQRVQLPNSVKVAEEWAKDPSIKPANKQEFL
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Known secondary structure (DSSP)


BTT
S
T
TTS


SB
TTSSSTTT
 .........360.........370.........380.........390.........400.........410.....
Sequence DIINDYGHSFPTEYTYNGEWYDEFYRNLQPVLDGKMSAEEYVKKAKPKMQKLLDQAIEQEKQASK
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Known secondary structure (DSSP) TT

GGGGSS
ST
TTSS
T


Download:PDB structure FASTA sequence

Hidden Markov model

View in Jmol



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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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