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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6r5kA_

Fold library idPDB HeaderMoleculeTitle
c6r5kA_4.80PDB header: rna binding proteinChain: A: PDB Molecule: pan2-pan3 deadenylation complex catalytic subunit pan2;


Added to library: Sat Jun 1 09:06:46 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EITAISFDEKANLIWSGDSYGCISSYDPTFQLYTRYRGHIGGNSVKDILSHRDGILSISEDSLHFANRRG
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Known secondary structure (DSSP)



TTSS

SSS

SSS




SSS

S
SS
SS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VTKLNLTSIDIAAFSELNTMCYSPHSLKNNIYCGGDNTNWGIASIDLNRGCLDSLLNYSSKVKLMCSNNK
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Known secondary structure (DSSP)

S
SSSSSSS

B



TT
SSS
B

B
SSSSSS

TTTSS



S



SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence VLSIGRQTGTVDLLDPTSNRTIKSFNAHSASISAMDLRDNTLVTVGKSKRFYNLYADPFVNVYDLRTMRQ
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Known secondary structure (DSSP)
TTS

TTT




SS


TT
B


SS


B
SSSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LPPVSFSKGTTMGSGGADFVQLHPLLPTVMIVASSSGSFDFIDLSNPTLRTQYVHPCQSIKKLCLSPNGD
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Known secondary structure (DSSP)


TTSSS





SSSSS

SS


SS
TT



S


S

TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VLGILEADNHLDTWRRSSNNMGMFTNTPEMLAYPDYFNDITSDGPISVDDETYPLSSVGMPYYLDKLLSA
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Known secondary structure (DSSP)


TT





S



S

SS



TT
S

S



S





TTT
SSS
SS







S

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence WPPVVFKSEGTIPQLLAVISSQNEKLSTQEFPLLRYDRTKYGMRNAIPDYVCLRDIRKQITSGLETSDIQ
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Known secondary structure (DSSP)







S
S








TTTGGG
SS








STT






TS
S

SS


 .........430.........440.........450.........460.........470.........480.........490
Sequence TYTSINKYEVPPAYSRLPLTSGRFGTDNFDFTPFNNTEYSGLDPDVDNHYTNAIIQLYRFIPEMFNFVVG
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Known secondary structure (DSSP)



SSSSS

GGGS






SBTTB



TTT

SS

B



STTSSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence CLKDENFETTLLTDLGYLFDMMERSHGKICSSSNFQASLKSLTDKRQEEYLESLCIRESIEDFNSSESIK
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Known secondary structure (DSSP) TTS

TT
SS
B


S


TTTTTT
SS

S
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence RNMPQKFNRFLLSQLIKEEAQTVNHNITLNQCFGLETEIRTECSCDHYDTTVKLLPSLSISGINKTGQNI
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Known secondary structure (DSSP) SSTSSS




SSSS





STT


SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LPYIEYAMKNVTQKNSICPTCGKTETITQECTVKNLPSVLSLELSLLDTEFSNIRSSKNWLTSEFYGSII
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Known secondary structure (DSSP) S



TTT
S






S



STT
S
S
 .........710.........720.........730.........740.........750.........760.........770
Sequence KNKAVLRSTASELKGTSHIFKYELNGYVAKITDNNNETRLVTYVKKYNPKENCFKWLMFNDYLVVEITEE
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Known secondary structure (DSSP) TTSSTTT


SS




TT

TTTT
SS

 .........780.........790.........800.........810.........820.........830.........840
Sequence EALKMTYPWKTPEIIIYCDAEELRKPFFSVDTYSINYDILFRDYFANGIRDTARREYKLLTHDEAPKSGT
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Known secondary structure (DSSP)



TT

T




STTS



TTTTS


S




S
SS





GGG


SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence LVAIDAEFVSLQSELCEIDHIRPKRTALARISIIRGEEGELYGVPFVDDYVVNTNHIEDYLTRYSGILPG
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SSSTTTT



S

S


TTTT




 .........920.........930.........940.........950.........960.........970.........980
Sequence DLDPEKSTKRLVRRNVVYRKVWLLMQLGCVFVGHGLNNDFKHININVPRNQIRDTAIYFLQGKRYLSLRY
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Known secondary structure (DSSP)

SSS
SS
TTTTTBSST




BT
BTTB


 .........990.........1000.........1010.........1020.........1030.........1040
Sequence LAYVLLGMNIQEGNHDSIEDAHTALILYKKYLHLKEKAIFEKVLNSVYEEGRAHNFKVPE
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Known secondary structure (DSSP) S
TTTTS
TT
TT
TTT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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