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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6r4lA_

Fold library idPDB HeaderMoleculeTitle
c6r4lA_3.50PDB header: lipid transportChain: A: PDB Molecule: npc intracellular cholesterol transporter 1-related protein


Added to library: Sat Sep 28 09:28:58 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATCAMYGNCGKKSVFGNELPCPVPRSFEPPVLSDETSKLLVEVCGEEWKEVRYACCTKDQVVALRDNLQK
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Known secondary structure (DSSP)
B
SB
S




SSS





B

SB





SSSSSS
TT

S
S




 .........80.........90.........100.........110.........120.........130.........140
Sequence AQPLISSCPACLKNFNNLFCHFTCAADQGRFVNITKVEKSKEDKDIVAELDVFMNSSWASEFYDSCKNIK
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Known secondary structure (DSSP) GGGT
SST
TTS







BSSSSSTT

B
S

B


TTSS
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence FSATNGYAMDLIGGGAKNYSQFLKFLGDAKPMLGGSPFQINYKYDLANEEKEWQEFNDEVYACDDAQYKC
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Known secondary structure (DSSP)
SSSSSBSS

SGGGSS
SSS




B




S


BTTBB









SSSSS


 .........220.........230.........240.........250.........260.........270.........280
Sequence ACSDCQESCPHLKPLKDGVCKVGPLPCFSLSVLIFYTICALFAFMWYYLTNFFNGKLANLFTKVGQFSVE
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Known secondary structure (DSSP)
TTT
SSSS
SS

SS






SS




TTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NPYKILITTVFSIFVFSFIIFQYATLETDPINLWVSKNSEKFKEKEYFDDNFGPFYRTEQIFVVNETGPV
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Known secondary structure (DSSP) SS





SGGGTS
TT





TTS

 .........360.........370.........380.........390.........400.........410.........420
Sequence LSYETLHWWFDVENFITEELQSSENIGYQDLCFRPTEDSTCVIESFTQYFQGALPNKDSWKRELQECGKF
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Known secondary structure (DSSP)

TTTTTS
TTS

STTTB

SSTTS



BSGGGGGTT



TTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence PVNCLPTFQQPLKTNLLFSDDDILNAHAFVVTLLLTNHTQSANRWEERLEEYLLDLKVPEGLRISFNTEI
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Known secondary structure (DSSP)
TT


SSS



BSSSSGGG
S


S



TT


TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SLEKELNNNNDISTVAISYLMMFLYATWALRRKDGKTRLLLGISGLLIVLASIVCAAGFLTLFGLKSTLI
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Known secondary structure (DSSP) TT

SSSSSSSSS

TTTTT



 .........570.........580.........590.........600.........610.........620.........630
Sequence IAEVIPFLILAIGIDNIFLITHEYDRNCEQKPEYSIDQKIISAIGRMSPSILMSLLCQTGCFLIAAFVTM
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Known secondary structure (DSSP) TTS
TTS
TTS
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence PAVHNFAIYSTVSVIFNGVLQLTAYVSILSLYEKRSNYKQITSFLKTFYFKMLTQKRLIIIIFSAWFFTS
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Known secondary structure (DSSP) TTTS







TGGGGGSGGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence LVFLPEIQFGLDQTLAVPQDSYLVDYFKDVYSFLNVGPPVYMVVKNLDLTKRQNQQKICGKFTTCERDSL
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Known secondary structure (DSSP) GGG

B


TTTTS
SS
TT






S

SSSGGGT

SSSS

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence ANVLEQERHRSTITEPLANWLDDYFMFLNPQNDQCCRLKKGTDEVCPPSFPSRRCETCFQQGSWNYNMSG
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Known secondary structure (DSSP) TTSSB
S



TT
GGG
SS
SSS
S
B

TT


TTSSS
SS


TTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence FPEGKDFMEYLSIWINAPSDPCPLGGRAPYSTALVYNETSVSASVFRTAHHPLRSQKDFIQAYSDGVRIS
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Known secondary structure (DSSP) S

STTS

SSS
SS
TTTSSSS

SSS





STG
 .........920.........930.........940.........950.........960.........970.........980
Sequence SSFPELDMFAYSPFYIFFVQYQTLGPLTLKLIGSAIILIFFISSVFLQNIRSSFLLALVVTMIIVDIGAL
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Known secondary structure (DSSP) GG
TTS

TTGGGSSGGGTSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MALLGISLNAVSLVNLIICVGLGVEFCVHIVRSFTVVPSETKKDANSRVLYSLNTIGESVIKGITLTKFI
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Known secondary structure (DSSP) TT

BSTS


SS

S
 .........1060.........1070.........1080.........1090......
Sequence GVCVLAFAQSKIFDVFYFRMWFTLIIVAALHALLFLPALLSLFGGE
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Known secondary structure (DSSP)


TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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