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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6qk7A_

Fold library idPDB HeaderMoleculeTitle
c6qk7A_3.30PDB header: translationChain: A: PDB Molecule: elongator complex protein 1;


Added to library: Sat Jul 20 08:42:04 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MRNLITLNKGKFKPTASTAEGDEDDLSFTLLDSVFDTLSDSITCVLGSTDIGAIEVQQFMKDGSRNVLAS
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Known secondary structure (DSSP)







SS

S




TTTT
SSS
BTTS


 .........80.........90.........100.........110.........120.........130.........140
Sequence FNIQTFDDKLLSFVHFADINQLVFVFEQGDIITATYDPVSLDPAETLIEIMGTIDNGIAAAQWSYDEETL
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Known secondary structure (DSSP)
B
SS
S



B
SSS

TTSB



SS


TT

B




B
TT


B
TTS

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence AMVTKDRNVVVLSKLFEPISEYHLEVDTGDVTALDSHEITISWRGDCDYFAVSSVEEVIKRRAFRVFSRE
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Known secondary structure (DSSP)

TTT

TT













SS






SSSS

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GQLDSASEPVTGMEHQLSWKPQGSLIASIQRKTDLGEEDSVDVIFFERNGLRHGEFDTRLPLDEKVESVC
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Known secondary structure (DSSP) S




S


S



BTTTB


B

B


SSS



TTS



SS



 .........290.........300.........310.........320.........330.........340.........350
Sequence WNSNSEALAVVLANRIQLWTSKNYHWYLKQELYASDISYVKWHPEKDFTLMFSDAGFINIVDFAYKMAQG
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Known secondary structure (DSSP)
SSSS

SSSSS

S

SSSSSTT

 .........360.........370.........380.........390.........400.........410.........420
Sequence PTLEPFDNGTSLVVDGRTVNITPLALANVPPPMYYRDFETPGNVLDVACSFSNEIYAAINKDVLIFAAVP
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Known secondary structure (DSSP)

SSSS


TTTTT



SSS
SS

SS




SSS

SS
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence SIEEMKKGKHPSIVCEFPKSEFTSEVDSLRQVAFINDSIVGVLLDTDNLSRIALLDIQDITQPTLITIVE
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Known secondary structure (DSSP)
TT


TTSSS
TT
TTT
SS

SSSSS



 .........500.........510.........520.........530.........540.........550.........560
Sequence VYDKIVLLRSDFDYNHLVYETRDGTVCQLDAEGQLMEITKFPQLVRDFRVKRVHNTSAEDDDNWSAESSE
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Known secondary structure (DSSP) SS

TTSSSTT

TT


SS



SSSS
S
S


 .........570.........580.........590.........600.........610.........620.........630
Sequence LVAFGITNNGKLFANQVLLASAVTSLEITDSFLLFTTAQHNLQFVHLNSTDFKPLPLVEEGVEDERVRAI
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Known secondary structure (DSSP) SSS
SSS


BSS

TT
SSS
S










TT

SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence ERGSILVSVIPSKSSVVLQATRGNLETIYPRIMVLAEVRKNIMAKRYKEAFIVCRTHRINLDILHDYAPE
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Known secondary structure (DSSP)
SS
TTTT
SSS


TT

STT

TTSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence LFIENLEVFINQIGRVDYLNLFISCLSEDDVTKTKYKETLYSGISKSFGMEPAPLTEMQIYMKKKMFDPK
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Known secondary structure (DSSP) TS

S

SS
STTTT



SSS
SS










TTTTS


T
 .........780.........790.........800.........810.........820.........830.........840
Sequence TSKVNKICDAVLNVLLSNPEYKKKYLQTIITAYASQNPQNLSAALKLISELENSEEKDSCVTYLCFLQDV
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Known secondary structure (DSSP) TSTTTSTTTTTSSS

STT

SSSTTSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence NVVYKSALSLYDVSLALLVAQKSQMDPREYLPFLQELQDNEPLRRKFLIDDYLGNYEKALEHLSEIDKDG
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Known secondary structure (DSSP) TTTS
TTTT

SS
TTT
TT

SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence NVSEEVIDYVESHDLYKHGLALYRYDSEKQNVIYNIYAKHLSSNQMYTDAAVAYEMLGKLKEAMGAYQSA
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Known secondary structure (DSSP) S

TT
TTTT
TT
T
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KRWREAMSIAVQKFPEEVESVAEELISSLTFEHRYVDAADIQLEYLDNVKEAVALYCKAYRYDIASLVAI
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Known secondary structure (DSSP) T
T
GGGTTT
TS

TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KAKKDELLEEVVDPGLGEGFGIIAELLADCKGQINSQLRRLREEYLVQSVGRLIERLNQTKPDAVRVVEG
Predicted secondary structure


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Known secondary structure (DSSP) TT
TTT
-

GGG
 .........1130.........1140.........1150.........1160.
Sequence LCRRNMREQAHQIQKNFVEVLDLLKANVEIHDFPKSHIVDF
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Known secondary structure (DSSP) TT
TT

-







SS

-


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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