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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6qajB_

Fold library idPDB HeaderMoleculeTitle
c6qajB_2.90PDB header: nuclear proteinChain: B: PDB Molecule: endolysin,transcription intermediary factor 1-beta;


Added to library: Sat Jul 27 08:37:13 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NLYFQGNIFEMLRIDERLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEK
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Known secondary structure (DSSP)






SS


SSS
TTSSS
SS

SSB

 .........80.........90.........100.........110.........120.........130.........140
Sequence LFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAK
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Known secondary structure (DSSP)
SSSTS

TT
TT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence SIWYNQTPNRAKRVITTFRTGTWDAYAAEALELLEHCGVCRERLRPEREPRLLPCLHSACSACLGPAAAG
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Known secondary structure (DSSP) SSSSTTTB
TTT

B

TTS


TTS

SSTTS




 .........220.........230.........240.........250.........260.........270.........280
Sequence DGTVVDCPVCKQQCFSKDIVENYFMRDSERTVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQYQFL
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Known secondary structure (DSSP) S
S

TTT


TTT
B

TTSS



S
B
SSSTT
B
TTT

TTTT



B
 .........290.........300.........310.........320.........330.........340.........350
Sequence EDAVRNQRKLLASLVKRLGDKHATLQKSTKEVRSSIRQVSDVQKRVQVDVKMAILQIMKELNKRGRVLVN
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Known secondary structure (DSSP)
 .........360.........370.........380.........390.........400.........410.........420
Sequence DAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEP
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Known secondary structure (DSSP) GGGS
S
GGGGT














 .........430.........440.
Sequence HGEMKFQWDLNAWTKSAEAFG
Predicted secondary structure






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Known secondary structure (DSSP)



T









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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