PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6q84D_

Fold library id	PDB Header	Molecule	Title
c6q84D_	3.70	PDB header: protein transport	Chain: D: PDB Molecule: importin beta-like protein kap122;

Links to external resources
Added to library: Sat May 4 08:20:36 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S I H E V V A L I E E L Y S P H P K H D V N Q I Q Q S L Q S I Q K S E Q G F H L A N E L L S D D K Y S A N V K Y F G A L T L T V Q L N T L W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S S S
S S
S S T T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N V F R S N L L Y L T K F S T L Y V S N P N M Y G Q S L I I I K K L M S N L S L I F T K I N D P Q Q W N N P I N T F I Q L M S V A D Q L L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T
S
T S
S
T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D S I N C S L T Y E Q L S Q F V S L S Q K H N E L A L T F T E V I V E D L T K F Q T K R H S M S Q I H E V V H E H L Y I S T M A L I N L N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T A Q A V F N P T V F D C I T A W I N Y I S L T R S V S S S G R M D L S E I F Q N L I D L M Y Q S T E G S D G Y E N A E K I L T I F G N V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T S S
S S S S S
T T T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence A N D P L L M S Y D L R Q Q I E C I F L G N S W M L Q Y M N Y L V T N D F F S E L K E L A I C I V D F L Q I N T L S V C N K L F T Q V Q D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
T T
G G G

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence Y I Q E Y I K V L L Q M T N F P L T P V L Q E F F S V R M V D F W L D L S D A Y T N L A S E T L R P N S I E L S T Q I F Q Q L I N I Y L P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T
T S
S T T
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence I S L S V K Q R I I E E E G E S T S V N E F E D F R N A V S D L A Q S L W S I L G N D N L T N V L I D G M G Q M P A A S D E T L I I K D T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
S S T S S
S
S T T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence V L F R I E T M C F V L N T I L V D M T L S E S P W I K N I V D A N K F F N Q N V I S V F Q T G F Q T S A S T K V S Q I L K L D F V R T S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S S
S T
S S T
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence T L I G T L A G Y F K Q E P F Q L N P Y V E A L F Q G L H T C T N F T S K N E Q E K I S N D K L E V M V I K T V S T L C E T C R E E L T P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G T T T S
S S S
T T T T S T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L M H F I S F L N T V I M P D S N V S H F T R T K L V R S I G Y V V Q C Q V S N G P E E Q A K Y I L Q L T N L L S G S I E H C L A S S V Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S S
T
S S
T T S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence Q E Q Q D Y I N C L L Y C I S E L A T S L I Q P T E L L Q R L S E F Q S F W S S D P L Q I R S K I M C T I D K V L D N S I Y C K N S A F V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T
T T
T S T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence I G C L I V G K G L N L P D G E P Y F L K Y N M S E V M N F V L R H V P N C E L A T C L P Y F V Y L L E K L I S E F R K E L T P Q E F D F M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S T T
T T
T T
S S S S
S T T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence F E K I L L V Y Y D A Y I I N D P D L L Q M T I G F V N N V L D V K P G L A I G S K H W T S F I L P Q F L K L I P S R E K F T I V A V A K F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T
T
T T T T T T T T T
S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence W T K L I N N K K Y N Q E E L T T V R Q Q V S S I G G D L V Y Q I M Y G L F H T Q R S D L N S Y T D L L R A L V A K F P I E A R E W L V A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T T S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . .

Sequence L P Q I A G H E K F I N K L L I T R G S R A A G N V I L Q W W L D C T T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
S S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	I	H	E	V	V	A	L	I	E	E	L	Y	S	P	H	P	K	H	D	V	N	Q	I	Q	Q	S	L	Q	S	I	Q	K	S	E	Q	G	F	H	L	A	N	E	L	L	S	D	D	K	Y	S	A	N	V	K	Y	F	G	A	L	T	L	T	V	Q	L	N	T	L	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	S	S	S		S	S													S	S	T	T	T												T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	V	F	R	S	N	L	L	Y	L	T	K	F	S	T	L	Y	V	S	N	P	N	M	Y	G	Q	S	L	I	I	I	K	K	L	M	S	N	L	S	L	I	F	T	K	I	N	D	P	Q	Q	W	N	N	P	I	N	T	F	I	Q	L	M	S	V	A	D	Q	L	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S	T	T	T			S																				T	S					S									T	S					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	S	I	N	C	S	L	T	Y	E	Q	L	S	Q	F	V	S	L	S	Q	K	H	N	E	L	A	L	T	F	T	E	V	I	V	E	D	L	T	K	F	Q	T	K	R	H	S	M	S	Q	I	H	E	V	V	H	E	H	L	Y	I	S	T	M	A	L	I	N	L	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T	S																													S	S								T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	A	Q	A	V	F	N	P	T	V	F	D	C	I	T	A	W	I	N	Y	I	S	L	T	R	S	V	S	S	S	G	R	M	D	L	S	E	I	F	Q	N	L	I	D	L	M	Y	Q	S	T	E	G	S	D	G	Y	E	N	A	E	K	I	L	T	I	F	G	N	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S	S			T														T	S	S		S	S	S	S	S																					T	T	T	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	A	N	D	P	L	L	M	S	Y	D	L	R	Q	Q	I	E	C	I	F	L	G	N	S	W	M	L	Q	Y	M	N	Y	L	V	T	N	D	F	F	S	E	L	K	E	L	A	I	C	I	V	D	F	L	Q	I	N	T	L	S	V	C	N	K	L	F	T	Q	V	Q	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	S																												T	T																	G	G	G
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	Y	I	Q	E	Y	I	K	V	L	L	Q	M	T	N	F	P	L	T	P	V	L	Q	E	F	F	S	V	R	M	V	D	F	W	L	D	L	S	D	A	Y	T	N	L	A	S	E	T	L	R	P	N	S	I	E	L	S	T	Q	I	F	Q	Q	L	I	N	I	Y	L	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S	S		T	T	T	T																				T	S		S	T	T			T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	S	L	S	V	K	Q	R	I	I	E	E	E	G	E	S	T	S	V	N	E	F	E	D	F	R	N	A	V	S	D	L	A	Q	S	L	W	S	I	L	G	N	D	N	L	T	N	V	L	I	D	G	M	G	Q	M	P	A	A	S	D	E	T	L	I	I	K	D	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												T		S	S																													T										S	S		S			S	T	T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	V	L	F	R	I	E	T	M	C	F	V	L	N	T	I	L	V	D	M	T	L	S	E	S	P	W	I	K	N	I	V	D	A	N	K	F	F	N	Q	N	V	I	S	V	F	Q	T	G	F	Q	T	S	A	S	T	K	V	S	Q	I	L	K	L	D	F	V	R	T	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	S		S	S	S		S								T		S	S														T					S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	T	L	I	G	T	L	A	G	Y	F	K	Q	E	P	F	Q	L	N	P	Y	V	E	A	L	F	Q	G	L	H	T	C	T	N	F	T	S	K	N	E	Q	E	K	I	S	N	D	K	L	E	V	M	V	I	K	T	V	S	T	L	C	E	T	C	R	E	E	L	T	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T								G	G	G	T														T	T	S						S	S	S																							T	T	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	M	H	F	I	S	F	L	N	T	V	I	M	P	D	S	N	V	S	H	F	T	R	T	K	L	V	R	S	I	G	Y	V	V	Q	C	Q	V	S	N	G	P	E	E	Q	A	K	Y	I	L	Q	L	T	N	L	L	S	G	S	I	E	H	C	L	A	S	S	V	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S	S	S		S	S																		T			S	S																									T	T	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	Q	E	Q	Q	D	Y	I	N	C	L	L	Y	C	I	S	E	L	A	T	S	L	I	Q	P	T	E	L	L	Q	R	L	S	E	F	Q	S	F	W	S	S	D	P	L	Q	I	R	S	K	I	M	C	T	I	D	K	V	L	D	N	S	I	Y	C	K	N	S	A	F	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	S							T	T												T	T															T	S					T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	I	G	C	L	I	V	G	K	G	L	N	L	P	D	G	E	P	Y	F	L	K	Y	N	M	S	E	V	M	N	F	V	L	R	H	V	P	N	C	E	L	A	T	C	L	P	Y	F	V	Y	L	L	E	K	L	I	S	E	F	R	K	E	L	T	P	Q	E	F	D	F	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	S	S	T	T			T	T				T	T															S	S	S	S																				S	T	T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	F	E	K	I	L	L	V	Y	Y	D	A	Y	I	I	N	D	P	D	L	L	Q	M	T	I	G	F	V	N	N	V	L	D	V	K	P	G	L	A	I	G	S	K	H	W	T	S	F	I	L	P	Q	F	L	K	L	I	P	S	R	E	K	F	T	I	V	A	V	A	K	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T					T	T	T																									T		T	T	T	T	T	T								T	T	T		S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	W	T	K	L	I	N	N	K	K	Y	N	Q	E	E	L	T	T	V	R	Q	Q	V	S	S	I	G	G	D	L	V	Y	Q	I	M	Y	G	L	F	H	T	Q	R	S	D	L	N	S	Y	T	D	L	L	R	A	L	V	A	K	F	P	I	E	A	R	E	W	L	V	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S																S																	T	T	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.
Sequence	L	P	Q	I	A	G	H	E	K	F	I	N	K	L	L	I	T	R	G	S	R	A	A	G	N	V	I	L	Q	W	W	L	D	C	T	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T									T	T		S	S	S		S