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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6ppbW_

Fold library idPDB HeaderMoleculeTitle
c6ppbW_4.30PDB header: viral proteinChain: W: PDB Molecule: major capsid protein;


Added to library: Sat Sep 14 08:39:40 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MEATLEQRPFPYLATEANLLTQIKESAADGLFKSFQLLLGKDAREGSVRFEALLGVYTNVVEFVKFLETA
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Known secondary structure (DSSP)














SS


TTTTSSSS




TTS
S




















STTSG
 .........80.........90.........100.........110.........120.........130.........140
Sequence LAAACVNTEFKDLRRMIDGKIQFKISMPTIAHGDGRRPNKQRQYIVMKACNKHHIGAEIELAAADIELLF
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Known secondary structure (DSSP) GGGGS

SS










SSS










TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence AEKETPLDFTEYAGAIKTITSALQFGMDALERGLVDTVLAVKLRHAPPVFILKTLGDPVYSERGLKKAVK
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Known secondary structure (DSSP) S


STTT

B
TTTTSS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence SDMVSMFKAHLIEHSFFLDKAELMTRGKQYVLTMLSDMLAAVCEDTVFKGVSTYTTASGQQVAGVLETTD
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Known secondary structure (DSSP) SSTTSSSSTTTS



GGGSS

SB
GGG
B
 .........290.........300.........310.........320.........330.........340.........350
Sequence SVMRRLMNLLGQVESAMSGPAAYASYVVRGANLVTAVSYGRAMRNFEQFMARIVDHPNALPSVEGDKAAL
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Known secondary structure (DSSP) S





SS



TTTSS


TTTTS
S



 .........360.........370.........380.........390.........400.........410.........420
Sequence ADGHDEIQRTRIAASLVKIGDKFVAIESLQRMYNETQFPCPLNRRIQYTYFFPVGLHLPVPRYSTSVSVR
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Known secondary structure (DSSP) STT
TT



TTTTTTT


SSS
S



SS




SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence GVESPAIQSTETWVVNKNNVPLCFGYQNALKSICHPRMHNPTQSAQALNQAFPDPDGGHGYGLRYEQTPN
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Known secondary structure (DSSP) STT
SS






B

TTS

B


GGGTSSGGGG

S
S






SS




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence MNLFRTFHQYYMGKNVAFVPDVAQKALVTTEDLLHPTSHRLLRLEVHPFFDFFVHPCPGARGSYRATHRT
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Known secondary structure (DSSP)

SS

S



TTS
STT
STTTTT

BTT

TTS



 .........570.........580.........590.........600.........610.........620.........630
Sequence MVGNIPQPLAPREFQESRGAQFDAVTNMTHVIDQLTIDVIQETAFDPAYPLFCYVIEAMIHGQEEKFVMN
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Known secondary structure (DSSP) SGGGS
TTTS
T





S
TT

SS
TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence MPLIALVIQTYWVNSGKLAFVNSYHMVRFICTHMGNGSIPKEAHGHYRKILGELIALEQALLKLAGHETV
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Known secondary structure (DSSP) TTSS

S

SSS

SSSS
S
S
BS
 .........710.........720.........730.........740.........750.........760.........770
Sequence GRTPITHLVSALLDPHLLPPFAYHDVFTDLMQKSSRQPIIKIGDQNYDNPQNRATFINLRGRMEDLVNNL
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Known secondary structure (DSSP) SSSBTBTTT
TTS

SSB


SS
TT

GGGTTTS



TTTTTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence VNIYQTRVNEDHDERHVLDVAPLDENDYNPVLEKLFYYVLMPVCSNGHMCGMGVDYQNVALTLTYNGPVF
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Known secondary structure (DSSP) SS
STT



B


TTT

TTTS



BTSSGGGT
 .........850.........860.........870.........880.........890.........900.........910
Sequence ADVVNAQDDILLHLENGTLKDILQAGDIRPTVDMIRVLCTSFLTCPFVTQAARVITKRDPAQSFATHEYG
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Known secondary structure (DSSP)
SSS
S


GGGT

SSTTTT



TGGGGG

SB


GGG


SSGGG
 .........920.........930.........940.........950.........960.........970.........980
Sequence KDVAQTVLVNGFGAFAVADRSREAAETMFYPVPFNKLYADPLVAATLHPLLANYVTRLPNQRNAVVFNVP
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Known secondary structure (DSSP) GS
B





STT
TTTGGG




-




GGG
SSSS



 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SNLMAEYEEWHKSPVAAYAASCQATPGAISAMVSMHQKLSAPSFICQAKHRMHPGFAMTVVRTDEVLAEH
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Known secondary structure (DSSP) TTT

TTSSSS
T

SSTTB


T


S


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ILYCSRASTSMFVGLPSVVRREVRSDAVTFEITHEIASLHTALGYSSVIAPAHVAAITTDMGVHCQDLFM
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Known secondary structure (DSSP)
TT





B


SS





SS

B

STT





 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence IFPGDAYQDRQLHDYIKMKAGENLPGLSHGQLATCEIIPTPVTSDVAYFQTPSNPRGRAACVVSCDAYSN
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Known secondary structure (DSSP)

S


S
TTTT



S

SSSS






TT

GGGTTS
B
SSSS



TTS
TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence ESAERLLYDHSIPDPAYECRSTNNPWASQRGSLGDVLYNITFRQTALPGMYSPCRQFFHKEDIMRYNRGL
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Known secondary structure (DSSP)
SSS

TT
SSSS
S
TTTSSTT







SS

B

GGGGTS
GGGGS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence YTLVNEYSARLAGAPATSTTDLQYVVVNGTDVFLDQPCHMLQEAYPTLAASHRVMLDEYMSNKQTHAPVH
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Known secondary structure (DSSP) S

SS



SSSS
B



TTT


TTTTTT
B

SS
STT

SB
 .........1340.........1350....
Sequence MGQYLIEEVAPMKRLLKLGNKVVY
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Known secondary structure (DSSP) SS
B



SS


B
STT

B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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