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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6pigG_

Fold library idPDB HeaderMoleculeTitle
c6pigG_3.50PDB header: rna binding protein/rnaChain: G: PDB Molecule: cas5_8 naturally occurring fusion protein from vibrio


Added to library: Sat Oct 5 08:21:42 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LKEIIASNPDDLTTELKRAFRPLTPHIAIDGNEIDALTILVNLTDKAKCKQKLRDEKWWASCINCVNYRQ
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Known secondary structure (DSSP)


GGGT
SS

SSSTTS




SS

TTTS



STSSTTTTSTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence SHNPKFPDIRSEGVIRTQALGELPSFLLSSSKIPPYHWSYSHDSKYVNKSAFLTNEFCWDGEISCLGELL
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Known secondary structure (DSSP) SSSSSSS




B



SS


TTS

GGGS







S
SSSTTTTTTSS



SSSS


T
 .........150.........160.........170.........180.........190.........200.........210
Sequence KDADHPLWNTLKKLGCSQKTCKAMAKQLADITLTTINVTLAPNYLTQISLPDSDTSYISLSPVASLSMQS
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Known secondary structure (DSSP) S
SS
TTSSSSS
TTTSSS
TT
B



SS




SSSS



 .........220.........230.........240.........250.........260.........270.........280
Sequence HFHQRLQDENRHSAITRFSRTTNMGVTAMTCGGAFRMLKSGAKFSSPPHHRLNNGSFLVLPNIRVCGATA
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Known secondary structure (DSSP) S
S
STT

B


S

TTT
TTTT

B

B

S





S







SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence LSSPVTVGIPSLTAFFGFVHAFERNINRTTSSFRVESFAICVHQLHVEKRGLTAEFVEKGDGTISAPATR
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Known secondary structure (DSSP)

TTT
BSS

TTT
S







B









B
SSS
B


S

 .........360.........370.........380.........390.........400.........410.........420
Sequence DDWQCDVVFSLILNTNFAQHIDQDTLVTSLPKRLARGSAKIAIDDFKHINSFSTLETAIESLPIEAGRWL
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Known secondary structure (DSSP)








S


SST

S
SSSS




STTSSS

S
TTTSSS



 .........430.........440.........450.........460.........470.........480.........490
Sequence SLYAQSNNNLSDLLAAMTEDHQLMASCVGYHLLEEPKDKPNSLRGYKHAIAECIIGLINSITFSSETDPN
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Known secondary structure (DSSP)


S

SSSSTTTS


B


SS

B

TT
SSSS
BB


B



S


TT
 .........500.........510.
Sequence TIFWSLKNYQNYLVVQPRSIN
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Known secondary structure (DSSP) SS




SSB


TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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