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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6p1hA_

Fold library idPDB HeaderMoleculeTitle
c6p1hA_3.20PDB header: dna binding protein/dnaChain: A: PDB Molecule: dna polymerase delta catalytic subunit;


Added to library: Sat Oct 5 08:40:09 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LSSFERKKLPTDFDPSLYDISFQQIDAEQSVLNGIKDENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVP
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Known secondary structure (DSSP)

SSS




SS

SSS






SSS
BTTB
TTS




 .........80.........90.........100.........110.........120.........130.........140
Sequence APNSSDANDQEQINKFVHYLNETFDHAIDSIEVVSKQSIWGYSGDTKLPFWKIYVTYPHMVNKLRTAFER
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Known secondary structure (DSSP)

SSSGGG
TTT
SS



S

SSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GHLSFNSWFSNGTTTYDNIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAH
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Known secondary structure (DSSP) T


STTSSSS



B



T

TT


TTT


TTT

BS
SB
TTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence PAEGDWSHTAPLRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPITGSMI
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Known secondary structure (DSSP)
SSSTT
S






TTS


TTTS


TT
SS
S

SS



BTTB

 .........290.........300.........310.........320.........330.........340.........350
Sequence FSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSS
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Known secondary structure (DSSP)
B
SS

SBSSTTTTTT

STT

SSBTT





 .........360.........370.........380.........390.........400.........410.........420
Sequence KAYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRL
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Known secondary structure (DSSP) TTT



TT
B

B


S

ST





B
STTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence AVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQAS
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Known secondary structure (DSSP) TS


TTS
ST
B






 .........500.........510.........520.........530.........540.........550.........560
Sequence DDQYEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDYF
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Known secondary structure (DSSP)







B





S
TTTT
SGGG
T

BTTT
TTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VTTKRRRGILPIILDELISARKRAKKDLRDEKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAI
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Known secondary structure (DSSP)
TTT


TT


TTGGGTTTTTTTTT
SSSSS

TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence SSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLF
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Known secondary structure (DSSP) STTTSTTTTTTSSTTTT
SS




BTT
B

S
S
TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence KHPINLEFEKAYFPYLLINKKRYAGLFWTNPDKFDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIERNV
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Known secondary structure (DSSP)
TT

SSTTTTSSTTT
SSS
TT

 .........780.........790.........800.........810.........820.........830.........840
Sequence DGALAFVRETINDILHNRVDISKLIISKTLAPNYTNPQPHAVLAERMKRREGVGPNVGDRVDYVIIGGND
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Known secondary structure (DSSP) TT
S
GGGS


S

SS

S



TT
B
B

SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence KLYNRAEDPLFVLENNIQVDSRYYLTNQLQNPIISIVAPIIGDKQANGMFVRSGELYIKALYDVRDLEEK
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Known secondary structure (DSSP)
STT

B



B
TT


TTTTT
 .........920.........930.........940.........950.........
Sequence YSRLWTQCQRCAGNLHSEVLCSNKNCDIFYMRVKVKKELQEKVEQLSKW
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Known secondary structure (DSSP)

SSS


B

TTSSSTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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