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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6ozwA_

Fold library idPDB HeaderMoleculeTitle
c6ozwA_2.06PDB header: isomerase,dna binding proteinChain: A: PDB Molecule: dna topoisomerase 1;


Added to library: Sat Jun 29 08:41:13 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PKKNLVIVESPAKAKTIEKYLGRSYKVVASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGPLINSLKKE
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Known secondary structure (DSSP)


S

TT

S
S
SSS

TTTTT

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AKNAKQIFLASDPDREGEAISWHLAHILDLDLKGKNRVVFNEITKDAVKNAFVEPRQIDMDLVDAQQARR
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Known secondary structure (DSSP)
S


SSTT

TTS

B


SS
SS
B


 .........150.........160.........170.........180.........190.........200.........210
Sequence VLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIIDRENEIKAFKPEEYWSIDGFFKKGNKKFQANFYG
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Known secondary structure (DSSP) T
TT







TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LDNKKTKLKSNDDVKKVLTRIKNDDFLVDKVEKKERKRNAPLPYTTSSLQQDAANKINFRTRKTMMVAQQ
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Known secondary structure (DSSP) TTS


B
S

SS




B



 .........290.........300.........310.........320.........330.........340.........350
Sequence LYEGIRLGSNGQQGLITYMRTDSTRISPVAQNDAANYITEHFGAEYSKAHEAIRPSNVNHTPESIAKYLD
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Known secondary structure (DSSP)

GGG


B

S







T
GGG





B
BS
TTS
GGGS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KDQLKLYTLIWNRFVASQMTAAVFDTVKVNLTQNGVLFIANGSQIKFKGYMAVYTKVLPEMIKGETVKKI
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Known secondary structure (DSSP) TTS

TT
GGGGG








TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence SANPEQHFTQPPARYSEASLIKTLEENGVGRPSTYAPTLETIQKRYYVRLVSKRFEPTELGEIVNSLIIE
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Known secondary structure (DSSP)






BTT


TTTTTSTT
 .........500.........510.........520.........530........
Sequence FFPDIVDVKFTAEMESKLDEVEIGKEEWQKVIDQFYKPFEKEVIKAEE
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Known secondary structure (DSSP)
GGGG
TSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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