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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6owsB_

Fold library idPDB HeaderMoleculeTitle
c6owsB_2.98PDB header: membrane proteinChain: B: PDB Molecule: efflux pump membrane transporter;


Added to library: Sat Jun 22 10:01:38 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSQFFIRRPVFAWVIAIFIIIFGLLSIPKLPIARFPSVAPPQVNISATYPGATAKTINDSVVTLIERELS
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Known secondary structure (DSSP)

GGGTS
TTSTTS
B
SS
S
S


TT

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQNKIKAVEARLPQVVRQQGLQVEASSSGFLMLV
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Known secondary structure (DSSP) T
TT
TTS
TT

TTTTTTTTTTS
TT




SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GINSPNNQYSEVDLSDYLVRNVVEELKRVEGVGKVQSFGAEKAMRIWVDPNKLVSYGLSISDVNNAIREN
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Known secondary structure (DSSP)
TT

S
TTTTSTTSS


TTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence NVEIAPGRLGDLPAEKGQLITIPLSAQGQLSSLEQFKNISLKSKTNGSVIKLSDVANVEIGSQAYNFAIL
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Known secondary structure (DSSP) S





S
SS

TT








S

STT


SSS


GGGTS



 .........290.........300.........310.........320.........330.........340.........350
Sequence ENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVKISIEKVIHTLLEAMVL
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Known secondary structure (DSSP) SSSS
TT

TTSS

TT



BS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENVERIM
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Known secondary structure (DSSP)
STTT

B
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence ATEGLSPKDATSKAMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTP
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Known secondary structure (DSSP) S


SSSSGGGG

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence ALCATILKPIDGHHQKKGFFAWFDRSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAF
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Known secondary structure (DSSP) TTS






TT

STTTS
S
B
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence MPEEDQGWFMTSFQLPSDATAERTRNVVNQFENNLKDNPDVKSNTAILGWGFSGAGQNVAVAFTTLKDFK
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Known secondary structure (DSSP)





S

SS

TTSSS
TTT

SS

STT

TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ERTSSASKMTSDVNSSMANSTEGETMAVLPPAIDELGTFSGFSLRLQDRANLGMPALLAAQDELMAMAAK
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Known secondary structure (DSSP) T

S
TSSSSSS


SSGGG
SSSSB
S


TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence NKKFYMVWNEGLPQGDNISLKIDREKLSALGVKFSDVSDIISTSMGSMYINDFPNQGRMQQVIVQVEAKS
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Known secondary structure (DSSP)
TT
S



TT

TTTTGGGTS

SSS
GGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence RMQLKDILNLKVMGSSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIA
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Known secondary structure (DSSP) SSSGGGGGG

SSSSGGGT
S


TT
TT

GG
 .........850.........860.........870.........880.........890.........900.........910
Sequence KLPKGIGYEWTGISLQEKQSESQMAFLLGLSMLVVFLVLAALYESWAIPLSVMLVVPLGIFGAIIAIMSR
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Known secondary structure (DSSP) GS
TTB


TSSTTSSSGGGTTTTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence GLMNDVFFKIGLITIIGLSAKNAILIVEFAKMLKEEGMSLIEATVAAAKLRLRPILMTSLAFTCGVIPLV
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Known secondary structure (DSSP) T

B
TT

TTTTS
 .........990.........1000.........1010.........1020...
Sequence IATGASSETQHALGTGVFGGMISATILAIFFVPVFFIFILGAV
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Known secondary structure (DSSP) S

STT
TTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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