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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6orbA_

Fold library idPDB HeaderMoleculeTitle
c6orbA_7.70PDB header: motor proteinChain: A: PDB Molecule: midasin;


Added to library: Sat Jun 1 09:57:06 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DVLIEWVAIYPQIYDILEHINYVPSNTLQRLRLHQPWSKIDYDVWFLYASDEIRETCKVKYYGETKTYGE
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
GGGGGTTTS
TS



TT

SS



S
T
SSTTGGGS

S
TTSS


ST
 .........80.........90.........100.........110.........120.........130.........140
Sequence VFVLENERISQLHRLFVSERAEHLKNLLFDALPLVELGGNVFFNSLVLTKSTQENLNRITPYLVQKRPIL
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TTTTT

TT





B
SSS
B





SST

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence LAEGIGKKFLITQIAAKLGQQIIRIHLSDSTDPKMLIGTYTWQPGVLTQAVITWILFTNIEHEVLSVLLP
Predicted secondary structure























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Known secondary structure (DSSP)



S
TT




TT

STTTT







S

S



 .........220.........230.........240.........250.........260.........270.........280
Sequence LLEKRQLVIPSRGETIYAKGSFQMFATSSMKTKILGQRLWQILYQPDECVEVVSTLYPVLSIICPTLYSV
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) SS



TTTT





S



SS

STSB



GGG
GGG
ST
 .........290.........300.........310.........320.........330.........340.........350
Sequence YKDIFDLFSSKIYRRLCLRDFYKFIKRVAFLYHKVFKEAIDMFGAFIPSRDGFDLVVRNVAIELNIPPEK
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SS confidence





































































Known secondary structure (DSSP)








TT

TTT


SSSSS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence ALQLSSSLGLLEQLAAGVQTNEPLLLVGETGTGKTTTIQLLAGLLGQKVTVINMSQQTESSDMLGGALVK
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SS confidence





































































Known secondary structure (DSSP) GGG

T

B



SSS
T




BTTSS
S


 .........430.........440.........450.........460.........470.........480.........490
Sequence AVRSGHWVLLDEINLASLETLEPIGQLLSPHKNFRLFGCMNPEPSFRSRFTEIYVHDLLSIIQKYIGSNE
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) T


B
TTS

S
T


SS


B
B




SSTTSS









 .........500.........510.........520.........530.........540.........550.........560
Sequence HVIREVAELYQVAKSLSLDPHYTVRTLSRTLSYVTEIAPIYGLRRSLYEGFCMSFLTLLDHTSESLLYNH
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) GGG



S
TTTTTTT

TTSSS
S
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence VVRFTLGNRDQQNAILKQIPKVPDYIAFCHYWLRRGQEHYIITPFVQKNLLNIARACSTRMPILIQGPTS
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)

T

TTTS





SSS







S



TT


S
ST
 .........640.........650.........660.........670.........680.........690.........700
Sequence SGKTSMIEYVAKKTGHKFVRINNHEHTDLQEVEALRNGYWIVLDELNLAPTDVLEALNRLLDDNRELFIP
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Known secondary structure (DSSP) T
TSSS




SS

TT

S


TGGG

SSTTTSSS




 .........710.........720.........730.........740.........750.........760.........770
Sequence QVLVKPHPEFMLFATQNPGRKHLSRAFRNRFLEIHFENELETILHKRCKPSYAAKIVQVFRELSLRRATL
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Known secondary structure (DSSP)






SS







S


TTGGGSS










 .........780.........790.........800.........810.........820.........830.........840
Sequence RDLFRWAFREAVGYQQLAENGYMLLAERARDQKDKLAVQEVIEKVMSKVVWTRPMIRLFCLVWRCLLAKE
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SS confidence





































































Known secondary structure (DSSP)


SSTSS
SS






T
 .........850.........860.........870.........880.........890.........900.........910
Sequence PVLLVCGKTTVCQILAECLHKELHIINAHGDIIGAQRPVRRSAVNYSLHSQLCEKFIDDLIEKFEKLNLI
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Known secondary structure (DSSP)






TT





GGGT








TS




 .........920.........930.........940.........950.........960.........970.........980
Sequence ERQIIKHDGALVTAMKDFFLLDEISLADDSVLERLNSVLELSRTLTLAVSLTAKDGFAFFATMNPGGKKE
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Known secondary structure (DSSP) T






SGGGS
SSS


B



B



SS
B











 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LSPALRNRFTEIWVPTEDILKIVEGKLHNNKIELARPLVEYAKWHANEYLYTDVISIRDVLSAVEFINAC
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Known secondary structure (DSSP)

TS






S
SS

TTSS





T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EILDLNLVLFNAVSMVFIDALLASLHAERQRCFAKLNELAHTDTTLMNASKVLRALQVLKPILLEGSPGV
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SS confidence





































































Known secondary structure (DSSP)
SS
TTTTT

T


STSSS


TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GKTSLITALARETGHQLVRINLSDQTDLMDLFGSDAPFLAAMRNGHWVLLDELNLASQSVLEGLNACLDH
Predicted secondary structure




























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Known secondary structure (DSSP)
TTTTTTSTT



SS

T



S


GGGS
TTSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence RNEAYIPELDKVFHPNFRVFAAQNPQGLPRSFINRFSVVYVALKEKDMIEIAACNYHQVNEDWRLKIIKF
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Known secondary structure (DSSP) S



SSSSS



TT









TTTTTTS



TTTTTSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence MFRLQDNIEKDISGSPWEFNLRDTLRWLQLLNDADYLEVMVLHRMRTVEDRVRTCELFKEVFDIDYEPRT
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Known secondary structure (DSSP) TTS








TT

TTSS


S
S





 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence IGFSLSSQCFKVGHSLLVRDQKTLLDSQNILQSQLPVLESVITCINKKWPCILVGDTATGKTCILRLLAA
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Known secondary structure (DSSP)



SS

SS
















GGGTT


S
TTSSS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence IAGAKIKEMAVNSDTDTMDLIDISRKASELFTDLSQQLLNIVIKYRNFDIFRETSLYTLTTSQAFTLLQK
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) T

TTS




STT


TT


TT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence VVDQLDETLVHSLGDIHEKARKLLAEFSASPAGGYLLKAVEEGHWFVLDNANLCSPAVLDRLNSLLELIV
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SS confidence





































































Known secondary structure (DSSP)

GGGTTS





TTSS
TTTSS




 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence NEKTTEDGHPKTIKPHPNFRLFLTVNPVYGELSRAMRNRGVEIFLLKEALTEIDKKQMSLLEPAPISSAV
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SS confidence





































































Known secondary structure (DSSP)

SSS
SS







TT



SSS



TTS







TTTSSS

SS

S
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence DTLASNISYIKYVFETMGNYMYIAHAIILALFSPRQLKLLRKVLTLKNLVQKIYCADYFNHMDLKASRFM
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) STTS



S
T

SSSS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence DIYEYPVQLREVVGLIQTINDFQSVILTSHLELPETYASGLLFVSAHEILDLTEEVNTYLLKSASAVYGS
Predicted secondary structure
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Known secondary structure (DSSP) SS


SS


SSTTTTTTT



TT


 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence TPSLWNLLNQFSKFLIEIASSNIVYKLDVIRHFLKLVVLWKNIYVWTSRFYCYTKMLGEWMFTKLLESFL
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP) S
S

T



T


 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence PKDSLEKFSELQGLHMQAIWDKWHAFVPRTYDQWSLWNTVDKLLTQYVNASMETTACEVVGTSLSLLNKV
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP)




S





SS


 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LVENEVGDIYSYLKILGKGVNELKSSILPENLVNLFNCLASLDLLHIFIKYTTSSFFLTDDFVRFIRVCF
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TS

S






T

S


S

 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence HSRISGNLLTLLHFDFCSLTTGNILGRIALAFTSANIFEHARLALLQHFMDHSSLLAEDSSTKMNLILLQ
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) S

SS




TTSS



SSTTTSS
TT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence RYAVIISIFLDQGKCEKANDLITKLSLPYEELAENFVSILEACKAFLVANSEFISYTYTERFIHSLRFLQ
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP)
SS



S
S

TT

 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence KMLKNQGMAYIYFASGMLLVYVPDKPFDPATVESLRHYLESLYKESQILEIAESLNSGKVNSVMRRLVST
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP)
TT

SS

S




TSSS

 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence EISNSTVYRSLNESIVPLYSELEFFMKSVVLNQYIFELAMRLSKESNIAVVEEAKSFVTKWKAYIERIRE
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP)






S




S

SS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence AYPQFVDVYELILSFISFMIYGIELLMFEAKRRLDERSQILSTLILTLVDPSSFARSFDDVSNLIEQIKV
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) S
SS


S
TTTT


 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LNDSIRFEIYLFLASRLCSEKQHSSDTHSLANSFVLLANEFYIHNAKIKQKELEEVVIERKRFLQLQFAF
Predicted secondary structure
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Known secondary structure (DSSP)






 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence WSLYNEIYSEKMNVIPLEQLMNTGSYLAKKIKVKNPDMIASSGFDIVSVVLMMGVKSTNEPSKAIEVRDL
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TS







SS



SS
S


T
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence IKIVESRAISLIKNWPENFVLRGLKDAIDAILNLSPFSPIAEYLSKLERVFHLLSEWEKLASREYSLANE
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) SSS

SSS



SSTS
TTT


 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence MDLIKKKIIDWRKFELSNWNNLLKLEEYKLSERVYPRLYSILQFIILKPFFFTKQNLCESASIIVQFITD
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTS


T
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LTVGEFQLCLKCLLSFSQHAASLRICHGIDAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMS
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP)

SSTTS

S
SSTSSTSS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence WKDTNVYALKESAKKSHAELFKVLHRYREVLRQPVSSYLSQKHDWDSLENNSAMWVAKKVNLSPSYIEKT
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP)




TTTTTS
TTTT




S











TTSSSS

 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence EIMKLVPVRFSNTPTTLRLMWTLFANVEKSTFTNMVSNLITDARELMKLTPETINDDNLSEIKHLKSRKH
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP)
TTT
S

S


GGG

TTS
S
ST
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence LLLTETFKTLKAFGLQYRVKAGIEENLSNLRNLLAVIPTFPVLSIEKVDRSLMKSLDFIPKFQTLAGHQH
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) SSS
SS

TTTTTTTSSTS





T
S
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence NDLVPEVQKGVGLFNSMLSLQLGERAQLVEFTNELLALKNVYSEVYDHDFENRAQAVSMLCQIYAIVIQK
Predicted secondary structure

SS confidence





































































Known secondary structure (DSSP)

TT



TTTT
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence HSSFQSIGHELSRFADLLSNKLFPSADKVSSIRDQQKGINDLIEYCRKKRTELPELSYCFKHLVSLQSLK
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP)



TT



S

TT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence DEFLNLMNFVLNLFDSLLSSIETATKNMRTFKELAETSSFIEMSSCFSKVLRAFNLKFQSMKLSSLKEKL
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP)

STTTTTTS
SSST
T
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence RSSSVDKMSCQLLMLFLPVCEQFINLAESVLDYFINVHNSNLDSLSKISTLFFMVANNPSKRTYQVMISI
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) S


TTTS





 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence DDSKSMSESGSTVLALETLALVTKALSLLEVGQIAVMKFGEQPELLHPFDKQFSSESGVQMFSHFTFEQS
Predicted secondary structure


























































SS confidence





































































Known secondary structure (DSSP)
SGGGGSS


TT

SSS
TTTS
ST


SS
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence NTNVLALADASMKCFNYANTASHHRSNSDIRQLEIIISDGICEDHDSIRKLLRRAQEEKVMIVFVILDNV
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)





T
S

SS

TTGGGTT

S
 .........3300.........3310.........3320.........3330.........3340.........3350..
Sequence NTQKKSSILDIKKVYYDTKEDGTMDLKIQPYIDEFAFDYYLVVRNIEELPQLLSSALRQWFQ
Predicted secondary structure




















SS confidence





























































Known secondary structure (DSSP) SS

TT

TTTS
TTTS
SSGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
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