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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6or6A_

Fold library idPDB HeaderMoleculeTitle
c6or6A_5.30PDB header: motor proteinChain: A: PDB Molecule: midasin;


Added to library: Sat Jun 1 08:29:01 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GLHMQAIWDKWHAFVPRTYDQWSLWNTVDKLLTQYVNASMETTACEVVGTSLSLLNKVLVENEVGDIYSY
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Known secondary structure (DSSP)



SSGGGTT





ST


TTS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LKILGKGVNELKSSILPENLVNLFNCLASLDLLHIFIKYTTSSFFLTDDFVRFIRVCFHSRIGNLLTLLH
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Known secondary structure (DSSP)




SS
T

S


S
STTS


STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GISFFDFCSLTTGNILGRIALAFTSANIFEHARLALLQHFMDHSSLLAEDSSTKMNLILLQRYAVIISIF
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Known secondary structure (DSSP)
S



GGGT
GGGGTTTT

TTTTTTS
SSST
 .........220.........230.........240.........250.........260.........270.........280
Sequence LDQGKCEKANDLITKLSLPYEELAENFVSILEACKAFLVANSEFISYTYTERFIHSLRFLQKMLKNQGMA
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Known secondary structure (DSSP)
SS
T
S
TS
SS
STT


 .........290.........300.........310.........320.........330.........340.........350
Sequence YIYFASGMLLVYVPDKPFDPASTVYRSLNESIVPLYSELEFFMKSVVLNQYIFELAMRLSKESNIAVVEE
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Known secondary structure (DSSP) S

SS






S
S



TS
S


S
 .........360.........370.........380.........390.........400.........410.........420
Sequence AKSFVTKWKAYIERIREAYPQFVDVYELILSFISFMIYGIELLMFEAKRRLDERSQILSTLILTLVDPSS
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Known secondary structure (DSSP) S

SS
TTTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence FARSFDDVSNLIEQIKVLNDSIRFEIYLFLASRLCSEKQHSDTHSLANSFVLLANEFYIHNAKIKQKELE
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Known secondary structure (DSSP) T




TT


S
 .........500.........510.........520.........530.........540.........550.........560
Sequence EVVIERKRFLQLQFAFWSLYNEIYSEKMNVIPLEQLMNTGSYLAKKIKVKNPDMIASSGFDIVSVVLMMG
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Known secondary structure (DSSP)
SS
S













SS

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence VKSTNEPSKAIEVRDLIKIVESRAISLIKNWPENFVLRGLKDAIDAILNLSPFSPIAEYLSKLERVFHLL
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Known secondary structure (DSSP)



SS

SSTT


SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence SEWEKLASREYSLANEMDLIKKKIIDWRKFELSNWNNLLKLEEYKLSERVYPRLYSILQFIILKPFFFTK
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Known secondary structure (DSSP) S
TTT


TTTTSTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence QNLCESASIIVQFITDLTVGEFQLCLKCLLSFSQHAASLRICHGIDAMLLNIYHYFEQFLSKVSEAIHTQ
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Known secondary structure (DSSP)

STTS
TT
STTSST
 .........780.........790.........800.........810.........820.........830.........840
Sequence KQSLENSIKERILLMSWKDTNVYALKESAKKSHAELFKVLHRYREVLRQPVSSYLSQKHDWDSLENNSAM
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Known secondary structure (DSSP) TS


S

SSTS
TTTTS














 .........850.........860.........870.........880.........890.........900.........910
Sequence WVAKKVNLSPSYIEKTEIMKLVPVRFSNTPTTLRLMWTLFANVEKSTFTNMVSNLITDARELMKLTPETI
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Known secondary structure (DSSP)
T



S

S


T


S


S
 .........920.........930.........940.........950.........960.........970.........980
Sequence NDDNLSEIKHLKSRKHLLLTETFKTLKAFGLQYRVKAGIEENLSNLRNLLAVIPTFPVLSIEKVDRSLMK
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Known secondary structure (DSSP) TSS

SS

TTSS







 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SLDFIPKFQTLAGHQHNDLVPEVQKGVGLFNSMLSLQLGERAQLVEFTNELLALKNVYSEVYDHDFENRA
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Known secondary structure (DSSP) T

S


T


TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence QAVSMLCQIYAIVIQKHSSFQSIGHELSRFADLLSNKLFPSADKVSSIRDQQKGINDLIEYCRKKRTELP
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Known secondary structure (DSSP) T



TTT

S

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ELSYCFKHLVSLQSLKDEFLNLMNFVLNLFDSLLSSIETATKNMRTFKELAETSSFIEMSSCFSKVLRAF
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Known secondary structure (DSSP)



TTTSS
SSTSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence NLKFQSMKLSSLKEKLRSSSVDKMSCQLLMLFLPVCEQFINLAESVLDYFINVHNSNLDSLSKISTLFFM
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Known secondary structure (DSSP)
SS


TTT
 ....
Sequence VANN
Predicted secondary structure

SS confidence



Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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