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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6oq5A_

Fold library idPDB HeaderMoleculeTitle
c6oq5A_3.87PDB header: toxinChain: A: PDB Molecule: toxin b;


Added to library: Sat Jul 13 09:42:27 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SLVNRKQLEKMANVRFRVQEDEYVAILDALEEYHNMSENTVVEKYLKLKDINSLTDTYIDTYKKSGRNKA
Predicted secondary structure



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Known secondary structure (DSSP)



S

TT



T

SS
STT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LKKFKEYLVIEILELKNSNLTPVEKNLHFIWIGGQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTL
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTTTTTT



S

SS



TTS
TT
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KKTIIESASNDTLESFRENLNDPEFNHTAFFRKRMQIIYDKQQNFINYYKAQKEENPDLIIDDIVKTYLS
Predicted secondary structure
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Known secondary structure (DSSP) GGGGG
SSSS



TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence NEYSKDIDELNAYIEESLNKVTENSGNDVRNFEEFKTGEVFNLYEQELVERWNLAGASDILRVAILKNIG
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TS


TTSSSTT
TTS

TTTTTS

T
 .........290.........300.........310.........320.........330.........340.........350
Sequence GVYLDVDMLPGIHPDLFKDINKPDSVKTAVDWEEMQLEAIMKHKEYIPEYTSKHFDTLDEEVQSSFESVL
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) S
TT



TTTSTT



SS

SSTT

STT


TTGGGS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ASKSDKSEIFLPLGDIEVSPLEVKIAFAKGSIINQALISAKDSYCSDLLIKQIQNRYKILNDTLGPIISQ
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) S
SGGGTS


SS

TT
B

SSSTTB
TT
TS
 .........430.........440.........450.........460.........470.........480.........490
Sequence GNDFNTTMNNFGESLGAIANEENISFIAKIGSYLRVGFYPEANTTITLSGPTIYAGAYKDLLTFKEMSID
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)




TTTTTSS

TTTTTSTT

GGGTTTSTTT
SS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence TSILSSELRNFEFPKVNISQATEQEKNSLWQFNEERAKIQFEEYKKNYFEGALGEDDNLDFSQNTVTDKE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)



TTS
TTTSS
SS



STTSSSS



SSGGG








 .........570.........580.........590.........600.........610.........620.........630
Sequence YLLEKISSSTKSSERGYVHYIVQLQGDKISYEAACNLFAKNPYDSILFQKNIEDSEVAYYYNPTDSEIQE
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP) TTS



S
S

S
SSST
TTT
TT
TT


SSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence IDKYRIPDRISDRPKIKLTFIGHGKAEFNTDIFAGLDVDSLSSEIETAIGLAKEDISPKSIEINLLGCNM
Predicted secondary structure
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Known secondary structure (DSSP) TT


GGG


SS
B
S
TT
S
BTTB
TTT


SSTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence FSYSVNVEETYPGKLLLRVKDKVSELMPSMSQDSIIVSANQYEVRINSEGRRELLDHSGEWINKEESIIK
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)



S

TT
TTSTT

TTS
S

SSS

TTSS

 .........780.........790.........800.........810.........820.........830.........840
Sequence DISSKEYISFNPKENKIIVKSKNLPELSTLLQEIRNNSNSSDIELEEKVMLAECEINVISNIETQVVEER
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)



SSSS




TTSS


TTTSTTTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence IEEAKSLTSDSINYIKNEFKLIESISDALCDLKQQNELEDSHFISFEDISETDEGFSIRFINKETGESIF
Predicted secondary structure

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Known secondary structure (DSSP)



TT


SSGGGGGGT

STT

SS




SSS




SSS




 .........920.........930.........940.........950.........960.........970.........980
Sequence VETEKTIFSEYANHITEEISKIKGTIFDTVNGNLDTTHEVNTLNAAFFIQSLIEYNSSKESLSNLSVAMK
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP)


S
TGGG
S






SS




SGGGTTT
SSSSS
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VQVYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPELSETSDPLLRQEIEAKIGIMAVNLT
Predicted secondary structure


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Known secondary structure (DSSP) TTTSS
TTT


TTTTTTTS


SS









TT



SS
T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TATTAIITSSLGIASGFSILLVPLAGISAGIPSLVNNELVLRDKATKVVDYFKHVSLVETEGVFTLLDDK
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) TS


SSS

B



TTTTT


SSSS
B
SGGGTT
STTT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VMMPQDDLVISEIDFNNNSIVLGKCEIWRMEGGSGHTVTDDIDHFFSAPSITYREPHLSIYDVLEVQKEE
Predicted secondary structure




































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Known secondary structure (DSSP)
TT

TTTT






S

TT
SS



SSS

SGGGS



SS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence LDLSKDLMVLPNAPNRVFAWETGWTPGLRSLENDGTKLLDRIRDNYEGEFYWRYFAFIADALITTLKPRY
Predicted secondary structure






























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Known secondary structure (DSSP)



SS








S

S


TTTT

S
SSS

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence EDTNIRINLDSNTRSFIVPIITTEYIREKLSYSFYGSGGTYALSLSQYNMGINIELSESDVWIIDVDNVV
Predicted secondary structure























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Known secondary structure (DSSP)





SS








T





SS

SS



SS

TTTS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence RDVTIESDKIKKGDLIEGILSTLSIEENKIILNSHEINFSGEVNGSNGFVSLTFSILEGINAIIEVDLLS
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP)

SSSB
TT
GGG

SS
TT


TTT
TTTTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence KSYKLLISGELKILMLNSNHIQQKIDYIGFNSELQKNIPYSFVDSEGKENGFINGSTKEGLFVSELPDVV
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Known secondary structure (DSSP) TS
TTTT

TTTS

SSS
TTTT
SSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LISKVYMDDSKPSFGYYSNNLKDVKVITKDNVNILTGYYLKDDIKISLSLTLQDEKTIKLNSVHLDESGV
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) SSS
SSS



B


S

SSSSSSS

SSS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence AEILKFMNRKGSTNTSDSLMSFLESMNIKSIFVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQ
Predicted secondary structure




















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Known secondary structure (DSSP) SS


S
TTGGGG
B
SS
S



TT

SS

TTS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence PYFIKFNTLETNYTLYVGNRQNMIVEPNYDLDDSGDISSTVINFSQKYLYGIDSCVNKVVISPNIYTDEI
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Known secondary structure (DSSP)

BTTGGGTS

S

SSSS





GGG
TTTGGG
S


TT

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence NITPVYETNNTYPEVIVLDANYINEKINVNINDLSIRYVWSNDGNDFILMSTSEENKVSQVKIRFVNVFK
Predicted secondary structure






























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Known secondary structure (DSSP)


TT
S








SS
SS
TTT
TT



TT
SS

TTTTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence DKTLANKLSFNFSDKQDVPVSEIILSFTPSYYEDGLIGYDLGLVSLYNEKFYINNFGMMVSGLIYINDSL
Predicted secondary structure









































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Known secondary structure (DSSP)
TT
SS

S
B


S
SSS



TT
SSS
B

SSTT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence YYFKPPVNNLITGFVTVGDDKYYFNPINGGAASIGETIIDDKNYYFNQSGVLQTGVFSTEDGFKYFAPAN
Predicted secondary structure


























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Known secondary structure (DSSP)


SSS




S
SSS



GGGTT



TT
SS




S

SS


TT
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence TLDENLEGEAIDFTGKLIIDENIYYFEDNYRGAVEWKELDGEMHYFSPETGKAFKGLNQIGDDKYYFNSD
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)
SSS

TT


TT
TTSSB

SS
TT

B
TTT

B

STTB
TT
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence GVMQKGFVSINDNKHYFDDSGVMKVGYTEIDGKHFYFAENGEMQIGVFNTEDGFKYFAHHNEDLGNEEGE
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)

B

SSSSS

SS




TT
SSS


SS

SSS
B



SGGG

TT
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence EISYSGILNFNNKIYYFDDSFTAVVGWKDLEDGSKYYFDEDTAEAYIGLSLINDGQYYFNDDGIMQVGFV
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) B




SS

TTSSB

STTB
TTT

B

SSSSS



SS




SS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence TINDKVFYFSDSGIIESGVQNIDDNYFYIDDNGIVQIGVFDTSDGYKYFAPANTVNDNIYGQAVEYSGLV
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP)
SS



TT




TT
TT

B

TT
TTSSSS

TT


B

 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence RVGEDVYYFGETYTIETGWIYDMENESDKYYFDPETKKACKGINLIDDIKYYFDEKGIMRTGLISFENNN
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Known secondary structure (DSSP) BSSS
B

B
SSSS


S
B


TTS
S

B


TT




SSS

SS

B

TT
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence YYFNENGEMQFGYINIEDKMFYFGEDGVMQIGVFNTPDGFKYFAHQNTLDENFEGESINYTGWLDLDEKR
Predicted secondary structure

































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Known secondary structure (DSSP)
TT

B

SSSSS

B
TT

B

TT
TTSSTT

TT


TT
 .........2320.........2330.........2340......
Sequence YYFTDEYIAATGSVIIDGEEYYFDPDTAQLVISEHH
Predicted secondary structure
















SS confidence



































Known secondary structure (DSSP)
TTSSB

TT
TTT
BB

STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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