PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6on4B_

Fold library id	PDB Header	Molecule	Title
c6on4B_	2.10	PDB header: dna binding protein	Chain: B: PDB Molecule: hth-type transcriptional repressor nanr;

Links to external resources
Added to library: Sat Jul 11 09:17:54 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K L S E M V E E E L E Q M I R R R E F G E G E Q L P S E R E L M A F F N V G R P S V R E A L A A L K R K G L V Q I N N G E R A R V S R P S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S S
S
T
T S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D T I I G E L S G M A K D F L S H P G G I A H F E Q L R L F F E S S L V R Y A A E H A T D E Q I D L L A K A L E I N S Q S L D N N A A F I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S D V D F H R V L A E I P G N P I F M A I H V A L L D W L I A A R P T V T D Q A L H E H N N V S Y Q Q H I A I V D A I R R H D P D E A D R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S
T T

. . . .

Sequence L Q S H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	L	S	E	M	V	E	E	E	L	E	Q	M	I	R	R	R	E	F	G	E	G	E	Q	L	P	S	E	R	E	L	M	A	F	F	N	V	G	R	P	S	V	R	E	A	L	A	A	L	K	R	K	G	L	V	Q	I	N	N	G	E	R	A	R	V	S	R	P	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	S	S		S	S	S		S											T																	T	S					T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	T	I	I	G	E	L	S	G	M	A	K	D	F	L	S	H	P	G	G	I	A	H	F	E	Q	L	R	L	F	F	E	S	S	L	V	R	Y	A	A	E	H	A	T	D	E	Q	I	D	L	L	A	K	A	L	E	I	N	S	Q	S	L	D	N	N	A	A	F	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S																																										T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	D	V	D	F	H	R	V	L	A	E	I	P	G	N	P	I	F	M	A	I	H	V	A	L	L	D	W	L	I	A	A	R	P	T	V	T	D	Q	A	L	H	E	H	N	N	V	S	Y	Q	Q	H	I	A	I	V	D	A	I	R	R	H	D	P	D	E	A	D	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T			T	T																S																												T	T
	.	.	.	.
Sequence	L	Q	S	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)