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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6ogdB_

Fold library idPDB HeaderMoleculeTitle
c6ogdB_4.40PDB header: toxinChain: B: PDB Molecule: toxin subunit yena2;


Added to library: Sat May 11 08:35:57 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSNSIEAKLQEDLRDALVDYYLGQIVPNSKDFTNLRSTIKNVDDLYDHLLLDTQVSAKVITSRLSLVTQS
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Known secondary structure (DSSP)
TTTTTTT
SSSGGGGGG
SS


TT

TT



 .........80.........90.........100.........110.........120.........130.........140
Sequence VQQYINRIALNLEPGLSINQQEATDWEEFANRYGYWAANQQLRMFPEIYVDPTLRLTKTEFFFQLESALN
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Known secondary structure (DSSP)


SS



GGGTSS
TTTTT


S






 .........150.........160.........170.........180.........190.........200.........210
Sequence QGKLTDDVAQKAVLGYLNNFEEVSNLEIIAGYQDGIDIENDKTYFVARTRMQPYRYFWRSLDASQRNANS
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Known secondary structure (DSSP)
SS

T


TT

SS



SS
TT

B
TT
B
SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QELYPTAWSEWKAISVPLENVANGIVRPIMMDNRLYISWFEVAEEKETDSDGNIIVSGRYRTKIRLAHLG
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Known secondary structure (DSSP)

B
TTSB




S




BTTBTT








TT

S


S




B
 .........290.........300.........310.........320.........330.........340.........350
Sequence FDGVWSSGTTLREEVLADQMEEMIAVVDRMEDEPRLALVAFKEMSESWDVVFRDKFQIKQFSQTQYLQFP
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Known secondary structure (DSSP) TTS
B










SS

SS



B



S
GGG


B
S
STTS













STT




S
 .........360.........370.........380.........390.........400.........410.........420
Sequence EASSADVWYIGKQIRLNTLFAKELIGKASRSLDLVLSWETQNSRLEEAILGGAAELIDLDGANGIYFWEL
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Known secondary structure (DSSP)
TT
SSSS


S







T
T




GGGTS


S



TTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence FFHMPFMVSWRFNVEQRYEDANRWVKYLFNPFECEDEPALLLGKPPYWNSRPLVDEPFKGYSLTQPSDPD
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Known secondary structure (DSSP) TTT
TTTB
TT
S

S
SS
SB
SGGGTS




GGGSTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence AIAASDPIHYRKAVFNFLTKNIIDQGDMEYRKLQPSARTLARLSYSTASSLLGRNELRGLWDRIENRIYN
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Known secondary structure (DSSP) TTS
SSS
GGGS


 .........570.........580.........590.........600.........610.........620.........630
Sequence LRHNLTLDGKEINMDLYDSSISPRGLMKQRYQRVVTARNASKMNFKVPNYRFEPMLNRSKSGVETLIQFG
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Known secondary structure (DSSP)
TTTTTT
SS
S

























B





SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence STLLSLLERKDSLSFDAYQMIQSGDLYRFSIDLQQQDIDINKASLEALQVSKQSAQDRYDHFKELYDENI
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Known secondary structure (DSSP) TTTTTSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence SSTEQKVIELQSQAANSLLMAQGMRTAAAALDVIPNIYGLAVGGSHWGAPLNAAAEIIMIKYQADSSKSE
Predicted secondary structure
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Known secondary structure (DSSP)
GGGGGGTTTTTTSS
SB
SSS
B


TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence SLSVSESYRRRRQEWELQYKQAEWEVNSVEQQINLQNMQIKAANKRLEQVEAQQQQAMALLDYFSERFTN
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Known secondary structure (DSSP) T
TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence ESLYTWLISQLSSLYLQAYDAVLSLCLSAEASLLYELNLGEQSFVGGGGWNDLYQGLMAGETLKLALMRM
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Known secondary structure (DSSP) TT





S
B



TTTTTTTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence ERVYVEQNSRRQEITKTISLKALLGESWPAELNKLKQKTPINFNLEEQIFVEDYQELYQRRIKSVSVSLP
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Known secondary structure (DSSP) S




TTTS



TTTS


S


 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MLVGPYEDVCAQLTQTSSSYSTRADLKHLVRSIQPNQQISLSTGVNDSGLFMLNFDDERFLPFEGSGVDS
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Known secondary structure (DSSP) B


TTS



S












TT


TT


B
SSSSGGGTS
S
SS

SS

TTTT

S

 .........1060.........1070........
Sequence SWRLQFTNLKQNLDSLNDVILHVKYTAA
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Known secondary structure (DSSP)
GGGGGT


B




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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