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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6odmW_

Fold library idPDB HeaderMoleculeTitle
c6odmW_4.30PDB header: viral proteinChain: W: PDB Molecule: major capsid protein;


Added to library: Sat Jun 22 08:28:56 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PPGYRYAAAMVPTGSLLSTIEVASHRRLFDFFSRVRSDANSLYDVEFDALLGSYCNTLSLVRFLELGLSV
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Known secondary structure (DSSP)

SS
S
SS






SSS

TTSSS




SS
SGGG


















TTTSSTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ACVCTKFPELAYMNEGRVQFEVHQPLIARDGPHPIEQPTHNYMTKIIDRRALNAAFSLATEAIALLTGEA
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Known secondary structure (DSSP) S
S

TT











SSS











TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LDGTGISAHRQLRAIQQLARNVQAVLGAFERGTADQMLHVLLEKAPPLALLLPMQRYLDNGRLATRVARA
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Known secondary structure (DSSP)

SS

BSTTTTTSSSS
S

SSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence TLVAELKRSFCETSFFLGKAGHRREAVEAWLVDLTTATQPSVAVPRLTHADTRGRPVDGVLVTTAPIKQR
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Known secondary structure (DSSP) SS
TTTS
S
TTTSS





TT


TT

B



 .........290.........300.........310.........320.........330.........340.........350
Sequence LLQSFLKVEDTEADVPVTYGEMVLNGANLVTALVMGKAVRSLDDVGRHLLEMQEEQLDLNRQTLDELESA
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Known secondary structure (DSSP) SS




S








STTT



SSTGGGSSS


SS


GGGGS

 .........360.........370.........380.........390.........400.........410.........420
Sequence PQTTRVRADLVSIGEKLIFLEALEKRIYAATNVPYPLVGAMDLTFVLPLGLFNPVMERFAAHAGDLVPAP
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Known secondary structure (DSSP)


TT
SSSSSTT
SS

TTS
SS



TTT


SSS
SS


T
 .........430.........440.........450.........460.........470.........480.........490
Sequence GHPDPRAFPPRQLFFWGKDRQVLRLSLEHAIGTVCHPSLMNVDAAVGGLNRDPVEAANPYGAYVAAPAGP
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Known secondary structure (DSSP) TS

SSSS





TTS


SSSTSSGGGG

TTS






SSS





S
 .........500.........510.........520.........530.........540.........550.........560
Sequence AADMQQLFLNAWGQRLAHGRVRWVAEGQMTPEQFMQPDNANLALELHPAFDFFVGVADVELPGGDVPPAG
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Known secondary structure (DSSP) GGGTTTTTTTS

TTGGGTT

TTGGGSGGGS
GGG

BTT

SS

SS

SS



 .........570.........580.........590.........600.........610.........620.........630
Sequence PGEIQATWRVVNGNLPLALCPAAFRDARGLELGVGRHAMAPATIAAVRGAFEDRNYPAVFYLLQAAIHGS
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Known secondary structure (DSSP)




BGGGS
TTTS
GGG
SSS




SS

TS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence EHVFCALARLVVQCITSYWNNTRCAAFVNDYSLVSYVVTYLGGDLPEECMAVYRDLVAHVEALAQLVDDF
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Known secondary structure (DSSP) TTSTTT


S

S


SSS
TTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence TLTGPELGGQAQAELNHLMRDPALLPPLVWDCDALMRRAALDRHRDCRVSAGGHDPVYAAACNVATADFN
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Known secondary structure (DSSP) S



TTTTSSSBGGG
TTS

SSSSTS
SSS


BTTB

S


TTT

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence RNDGQLLHNTQARAADAADDRPHRGADWTVHHKIYYYVMVPAFSRGRCCTAGVRFDRVYATLQNMVVPEI
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Known secondary structure (DSSP)

SS



SSTT


SSS
SS
TTTS


T






 .........850.........860.........870.........880.........890.........900.........910
Sequence TPGEDCPSDPVTDPAHPLHPANLVANTVNAMFHNGRVVVDGPAMLTLQVLAHNMAERTTALLCSAAPDAG
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Known secondary structure (DSSP)
SSS




SSS
TTSTTSGGG

TTST



TTTSGGGGGGTTT




B



S
TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence ANTASTTNMRIFDGALHAGILLMAPQHLDHTIQNGDYFYPLPVHALFAGADHVANAPNFPPALRDLSRQV
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Known secondary structure (DSSP) S
BTTBSS



TSS


S

SS
TTSS


STTS

TTTSTTSSS

TTSTTTTTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PLVPPALGANYFSSIRQPVVQHVRESAAGENALTYALMAGYFKISPVALHHQLKTGLHPGFGFTVVRQDR
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Known secondary structure (DSSP)



TTS

STTSSS
ST

S
TTSBB
STTTT


S



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence FVTENVLFSERASEAYFLGQLQVARHETGGGVNFTLTQPRGNVDLGVGYTAVVATATVRNPVTDMGNLPQ
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Known secondary structure (DSSP)
SS



B

TT
B

SS





SB



B
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence NFYLGRGAPPLLDNAAAVYLRNAVVAGNRLGPAQPVPVFGCAQVPRRAGMDHGQDAVCEFIATPVSTDVN
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Known secondary structure (DSSP)
GGG


S

BSSTT
SS

SS


SSS






S


SS
B

B



TT

T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence YFRRPCNPRGRAAGGVYAGDKEGDVTALMYDHGQSDPSRAFAATANPWASQRFSYGDLLYNGAYHLNGAS
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Known secondary structure (DSSP) S
B
SSSS


SSS

SSTT

SS

SSS
SSS
S
SSSSSTT

TTT


SSS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence PVLSPCFKFFTSADIAAKHRCLERLIVETGSAVSTATAASDVQFKRPPGCRELVEDPCGLFQEAYPLTCA
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Known secondary structure (DSSP)
B

TT
TTS


TGGGTS
SS
TT
SB
B


SS


B


B
S
 .........1340.........1350.........1360.......
Sequence SDPALLRSARNGEAHARETHFAQYLVYDASPLKGLAL
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Known secondary structure (DSSP) SSTTGGG
STT


TT


STTTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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