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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6odmC_

Fold library idPDB HeaderMoleculeTitle
c6odmC_4.30PDB header: viral proteinChain: C: PDB Molecule: capsid vertex component 1;


Added to library: Sat Jun 22 08:30:02 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNAHLANEVQYDLGHVPGRPSSLVHVIISSECLAAAGIPLAALMRANFQVEIQTRAHATGDCTPWCTAFA
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Known secondary structure (DSSP)
T
SS
SS

SS




SSS

B


 .........80.........90.........100.........110.........120.........130.........140
Sequence AYVPADAVGELLAPVVPAHPGLLPRASSAGGLFVSLPVVCDAQGVYDPYAVAALRLAWGSGASCARVILF
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Known secondary structure (DSSP)
SS
S


TT
TTS

B








SS
B

SS



SSSSSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence SYDELVPPNTRYAADSTRIMRVCRHLCRYVALLGAAAPPAAKEAAAHLSMGLGPPISPEEQLTAPGGDTT
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Known secondary structure (DSSP) TTTS

SS

TTTTTTGGGS



B
SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence AAQDVSIAQENEEILALVQRSLVEWLDRGWEALAGGDRPDWLWSRRSISVVLRHHYGTKQRFVVVSYENS
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Known secondary structure (DSSP)

SS



TTT

SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VAWGGRRARPPLLSSALATALTEACAAERVVRPHQLSPAGQAELLLRFPALEVPLRHPRPVLPPFDIAAE
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Known secondary structure (DSSP) SSSS
SS

TT

B
TT
SSGGGS

GGG
SS
SS
TT
ST
 .........360.........370.........380.........390.........400.........410.........420
Sequence VAFTARIHLACLRALGQAIRAALQGGPRISQRLRYDFGPDQRAWLGEVTRRFPILLENLMRAVEGTAPDA
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Known secondary structure (DSSP) SSS




B
S




STTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence FFHTAYALAVLAHLGGRVVPLGDDLPARFADSDGHYVFDYYSTSGDTLRLNNRPIAVAMDGDVSKREQSK
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Known secondary structure (DSSP) TTS



BTT

S
S


SSSSSSS

B

SS
SS
TTS




 .........500.........510.........520.........530.........540.........550.........560
Sequence CRFMEAVPSTAPRRVCEQYLPGESYAYLCLGFNRRLCGIVVFPGGFAFTINIAAYLSLSDPVARAAVLRF
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Known secondary structure (DSSP)






S


SGGGS
TTS
SS
TT


TTSB


GGGT



TT
 .....
Sequence CRKVS
Predicted secondary structure


SS confidence




Known secondary structure (DSSP) B




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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