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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6o16A_

Fold library idPDB HeaderMoleculeTitle
c6o16A_2.88PDB header: hydrolase/rnaChain: A: PDB Molecule: deah (asp-glu-ala-his) box polypeptide 37;


Added to library: Sat Apr 20 08:41:57 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VFIPVNRTPEMQEERLKLPILAEEQAIMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGYSSEDSIIGVT
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Known secondary structure (DSSP)







SGGGGG
S
TTS
TT


SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence EPRRVAAVAMSQRVAKEMNLSHRVVSYQIRYEGNVTEETRIKFMTDGVLLKEIQKDFLLLKYKVVIIDEA
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Known secondary structure (DSSP) SSTT

TTT
SS
B


TT
S
TT
TT

G
 .........150.........160.........170.........180.........190.........200.........210
Sequence HERSVYTDILLGLLSRIVALRAKRHLPLKLLIMSATLRVEDFTQNQRLFTTPPPVIKVESRFPVTVHFND
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Known secondary structure (DSSP) GG

TT


SSS

S
TTT
SS









 .........220.........230.........240.........250.........260.........270.........280
Sequence DYSGECFRKVCKIHRMLPAGGILVFLTGQAEVHALCRRLRKAFLPLHVLPLYSLLAPEKQAQVFKPPPGT
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Known secondary structure (DSSP)
S
S

SS




TTS
TTTS




 .........290.........300.........310.........320.........330.........340.........350
Sequence RLCVVATNVAETSLTIPGIKYVVDCGKVKKRYYDRVTGVSSFRVTWVSQASADQRAGRAGRTEPGHCYRL
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Known secondary structure (DSSP)

GGGTTT


TT
S
TTT



TSSS
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence YSSAVFGDFEQFPPPEITRRPVEDLILQMKALSIEKVINFPFPTPPSVEALVAAEELLVALGALQAQLSC
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Known secondary structure (DSSP) S
S
SS


GGGGS

TT


GGGS

SS


TTSB





 .........430.........440.........450.........460.........470.........480.........490
Sequence PITALGRTMSTFPVAPRYAKMLALSQQHGCLPYTIAIVAAMTVRELFEELDREKELAELKGRRARVAQMK
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Known secondary structure (DSSP)
B
SSS
TSSTT
SS

B





 .........500.........510.........520.........530.........540.........550.........560
Sequence RTWAGQGPSLKLGDLMVLLGAVGACEYAGCSPQFCQANGLRYKAMLEIRRLRGQLTTAVNAVCPEDPKMQ
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Known secondary structure (DSSP) S
SSTTTS
TTB
S



S

 .........570.........580.........590.........600.........610.........620.........630
Sequence PPTESQVTYLRQIMAAGLGDHLARRVQSLDPKWKNAYKTPLLDDPVFIHPSSVLFKELPEFVVYQEIVET
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Known secondary structure (DSSP)


TGGG




GGGTT
TT
TTSTTTTT

S
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence TKMYMKGVSTVEIQWIPSLLPSYCQFDAPLEEPAPSYCPESGQVLCHRASVFYRVGWPLPAVQVDFPEGI
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Known secondary structure (DSSP) SSS


TT
GGG
SSS


TTT
BTTT



SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence DRYKYFAKFLLEGQVFRKLASFKSCLLSSPSTMLKTWARLQPRTETLLRALVAHKADSRDSLLAAWKKNP
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Known secondary structure (DSSP) TSS
GGGGGGGGG
SS
GGGGT

S
TT
STT

B
T
 .........780.........790........
Sequence KYLLAEYCEWLPKAMHSDVEKNWPPTTD
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Known secondary structure (DSSP) TTTTTS
T


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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