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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6nzkB_

Fold library idPDB HeaderMoleculeTitle
c6nzkB_2.90PDB header: viral proteinChain: B: PDB Molecule: spike surface glycoprotein;


Added to library: Sat Jun 8 08:15:53 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VIGDLKCTSDNINDKDTGPPPISTDTVDVTNGLGTYYVLDRVYLNTTLFLNGYYPTSGSTYRNMALKGSV
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Known secondary structure (DSSP)

SSB



TT




S

B
SS



TTSTT
B

TT



S

TT





SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LLSRLWFKPPFLSDFINGIFAKVKNTKVIKDRVMYSEFPAITIGSTFVNTSYSVVVQPRTINKLQGLLEV
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Known secondary structure (DSSP)
GGGGSTTT
SS
TT


SS
STTS



 .........150.........160.........170.........180.........190.........200.........210
Sequence SVCQYNMCEYPQTICHPNLGNHRKELWHLDTGVVSCLYKRNFTYDVNADYLYFHFYQEGGTFYAYFTDTG
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Known secondary structure (DSSP)




TTT

SS



SS



TT
STTSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VVTKFLFNVYLGMALSHYYVMPLTCNSKLTLEYWVTPLTSRQYLLAFNQDGIIFNAVDCMSDFMSEIKCK
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Known secondary structure (DSSP) SSB
SS





SS






TTS
TTSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence TQSIAPPTGVYELNGYTVQPIADVYRRKPNLPNCNIEAWLNDKSVPSPLNWERKTFSNCNFNMSSLMSFI
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Known secondary structure (DSSP) TT
SS

S





S

SS

B

T
S
STT
S


 .........360.........370.........380.........390.........400.........410.........420
Sequence QADSFTCNNIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLGNLGYLQSFNYRIDTTATSCQLYYNLPAAN
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Known secondary structure (DSSP) SS
GGGGGG


TT
GGGGSTT


T



SSS
GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence VSVSRFNPSTWNKRFGFIEDSVFKPRPAGVLTNHDVVYAQHCFKAPKNFCPCKLNNGIGTCPAGTNYLTC
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Known secondary structure (DSSP)





TT

S
BTTTSSB
TTSS


TT



BB


TT


 .........500.........510.........520.........530.........540.........550.........560
Sequence TPDPITFTGTYKCPQTKSLVGIGEHCSGLAVKSDYCGGNSCTCRPQAFLGWSADSCLQGDKCNIFANFIL
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Known secondary structure (DSSP)
S
SSS


SS

SS



TT






GGGBTTT
GGGS
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence HDVNSGLTCSTDLQKANTDIILGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYITN
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Known secondary structure (DSSP)
SS







BSSTT





TT


TTS

TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence RTFMIRSCYSGRVSAAFHANSSEPALLFRNIKCNYVFNNSLTRQLQPINYFDSYLGCVVNAYNSTAISVQ
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Known secondary structure (DSSP)






TT
SS
T

TTTTTT


S
TTSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence TCDLTVGSGYCVDYSTTGYRFTNFEPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTID
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Known secondary structure (DSSP)

STT


S










SS
BTTB




 .........780.........790.........800.........810.........820.........830.........840
Sequence CAAFVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDIN
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Known secondary structure (DSSP) S
S
GGGGTT



GGGGT



TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence FSPVLGCLGSASSRSAIEDLLFDKVKLSDVGFVEAYNNCTGGAEIRDLICVQSYKGIKVLPPLLSENQFS
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Known secondary structure (DSSP)
TTT







S

T
SSSTTTTT

TT
TT

SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence GYTLAATSASLFPPWTAAAGVPFYLNVQYRINGLGVTMDVLSQNQKLIANAFNNALYAIQEGFDATNSAL
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Known secondary structure (DSSP) TTTSSS
GGGTT

TTT

TT
TTTS

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAEAQIDRLINGRLTALNAYVSQQLSDS
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Known secondary structure (DSSP) GGGG

TTSS
S
S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAG
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Known secondary structure (DSSP) TTS


S

SSSTTSSTTS

TT
 .........1130.........1140.........1150.........1160.........1170.....
Sequence DRGIAPKSGYFVNVNNTWMYTGSGYYYPEPITENNVVVMSTCAVNYTKAPYVMLN
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Known secondary structure (DSSP) S
SSTTSSS



GGGSS

TTS
TT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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