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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6nr2B_

Fold library idPDB HeaderMoleculeTitle
c6nr2B_4.00PDB header: transport proteinChain: B: PDB Molecule: transient receptor potential cation channel subfamily m


Added to library: Sat Feb 23 08:32:55 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XXXXXXXXXXXXXXXXXXXXXKYIRLSCDTDSETLYDLMTQHWHLKTPNLVISVKNFALKPRMRKIFSRL
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Known secondary structure (DSSP)





TT









B



B



S

TT



S






TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IYIAQSKGAWIFTGGTHYGLMKYIGEVVRDNTISRSSEENVVAIRDPLYCLDNNHTHLLLVIEAKVRTQL
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Known secondary structure (DSSP) T


SSSSS











TT
SBB






S
 .........150.........160.........170.........180.........190.........200.........210
Sequence EKYISERVIPESNYGGKIPIVCFAQGKETLKSINVAIKSKIPCVVVEGSGRIADVIASLVSSCVKESLLR
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Known secondary structure (DSSP) T


TT
TTSSS



TT

TT
SS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence FLPRTISRLSEEETESWIKWIKEVLESPHLLTVIKIEEIVSNAISFALYKAFSTNEHDRDNWNGQLKLLL
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Known secondary structure (DSSP)
S
TT
TTT




TTSS
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence EWNQLDLASDEIFTNDRNWESADLQDVMFTALVKDRPKFVRLFLENGLNLRKFLTTEVLRELYTNNFSSL
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Known secondary structure (DSSP) TT
T

TTS


TT
ST




SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VFKNLQIAKNSYNDALLTFVWKMVEDFRRPITRHPLQALFIWSVLQNKKELSKVIWEQTRGCTLAALGAS
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Known secondary structure (DSSP) S





S
TT
GGG
SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence KLLKSMAKVKNDINAAGESEELANEYETRAVELFTECYSNDEDLAEQLLTYSCEAWGGSNCLELAVEARD
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Known secondary structure (DSSP) T

S

S


SSSSS

T
 .........500.........510.........520.........530.........540.........550.........560
Sequence QQFIAQPGVQNFLSKQWYGEISRDTKNWKIILCLFFFPLIGCGFISFRKKKLFLYYVSFFTSPFVVFSWN
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Known secondary structure (DSSP) STTTSSTTB
SS


ST
S
B


TS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VIFYIAFLLLFAYVLLMDFQKEPTALEIILYVLVFILLCDEVRQWYMNGSKYFSDLWNVMDTLAIFYFIA
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Known secondary structure (DSSP) S

SSS

TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence GIVFRLHSDESSWYSGRVIFCLDYIVFTLRLIHIFTVSRNLGPKIIMLQRMMIDVFFFLFLFAVWMVAFG
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Known secondary structure (DSSP) S

SSTTTTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence VARQGILRKNEHRWEWIFRSVIYEPYLAMFGEWITIPLVCIYMLSTNILLVNLLVAMFGYTVGNNDQVWK
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STTT

 .........780.........790.........800.........810.........820.........830.........840
Sequence FQRFFLVQEYCSRLTIPFPFVIFAYIFMVMRKEPSVCCSRNEDNEILAWEAVMKENYLVKINTKAXXXXX
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Known secondary structure (DSSP) TS

S
GGG




SS
STT

 .........850.........
Sequence XXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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