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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6npoA_

Fold library idPDB HeaderMoleculeTitle
c6npoA_2.40PDB header: transport proteinChain: A: PDB Molecule: oligopeptide abc transporter, oligopeptide-binding protein;


Added to library: Sat Feb 9 09:00:18 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EKLAAKQVFNKTENQEIPTXDTSKSTDTLGSQILGNTXEGLYRLDKENKPIPAAAESSTKSEDGKKYTFK
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Known secondary structure (DSSP)

B
S

SS

S


TTT

S


S
TTS
SS
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LRKDAKWSNGDSVTAKDFVFAWQRLLDPKTAAEYAFIAFPIKNAEAVNKGEKPVTELGVKAVDDLTLEVE
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Known secondary structure (DSSP)
TT
B
TTS
B

T
GGG

TTGGGGTTBTTTSS
GGGSSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LEQAVPYFLNLVAFPSYYPLNEKFVKEKGDKYGLESDTTVYNGPFVLTDWKHEQGWKLKKNDQYWDKKTV
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Known secondary structure (DSSP) BSS

TTTTSGGG



GGGTTSSGGG



SSTTT
TT
TTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KLDEINYSVVKEPATNVNLYDSGQIDFSLLTGEFVDKYRNNKEEYGVYNEPSTFFIRLNQKRGGQDTPLK
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Known secondary structure (DSSP)

S


TS
S
GGGGGGGTT
TTT
STT
GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence SKKLREAIALSIDKKNLTNVILNDGSKPADYLVPKGLAAGPDGKDFQETFKNGVKPDAKKAAAAWEEAKK
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Known secondary structure (DSSP)
S

TTT
SS

S
SS
TTS
B
TTS
B

S



 .........360.........370.........380.........390.........400.........410.........420
Sequence ELGKDQVTIEFLNYDTGNAKKVGEYVKDQIEKNLKGVTVNIKLQPFKQKLKLESDQDYDISYGGWSPDYA
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Known secondary structure (DSSP) T
S
SSSTT
TT

S

SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence DPXTYLDXFESKHSHNQXSFSDQKYDEIIKKAGGELXTDAKKRWEELGKAEELLLEEDVALVPLYQSARS
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Known secondary structure (DSSP) STGGGSTT
TT

S



TTTS
TTS

 .........500.........510........
Sequence YVXKPHVKGVVKHNISPEYSYKWAYVTE
Predicted secondary structure








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Known secondary structure (DSSP)
TT


SSSS

TT
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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