PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6nmiH_

Fold library id	PDB Header	Molecule	Title
c6nmiH_	3.70	PDB header: transcription	Chain: H: PDB Molecule: cdk-activating kinase assembly factor mat1;

Links to external resources
Added to library: Sat Mar 16 08:43:53 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D D Q G C P R C K T T K Y R N P S L K L M V N V C G H T L C E S C V D L L F V R G A G N C P E C G T P L R K S N F R V Q L F E D P T V D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T T
S
S S
B T T T S S B
S S S
B
S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence E V E I R K K V L K I Y N K R E E D F P S L R E Y N D F L E E V E E I V F N L T N N V D L D N T K K K M E I Y Q K E N K D V I Q K N K L K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T T S S S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T R E Q E E L E E A L E V E R Q E N E Q R R L F I Q K E E Q L Q Q I L K R K N K Q A F L D E L E S S D L P V A L L L A Q H K D R S T Q L E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	D	Q	G	C	P	R	C	K	T	T	K	Y	R	N	P	S	L	K	L	M	V	N	V	C	G	H	T	L	C	E	S	C	V	D	L	L	F	V	R	G	A	G	N	C	P	E	C	G	T	P	L	R	K	S	N	F	R	V	Q	L	F	E	D	P	T	V	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S			S	S	S	T	T						S								S	S					B									T	T	T	S	S	B		S	S	S			B		S	S	S								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	E	V	E	I	R	K	K	V	L	K	I	Y	N	K	R	E	E	D	F	P	S	L	R	E	Y	N	D	F	L	E	E	V	E	E	I	V	F	N	L	T	N	N	V	D	L	D	N	T	K	K	K	M	E	I	Y	Q	K	E	N	K	D	V	I	Q	K	N	K	L	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	S					T	T	T	S	S	S																					S																		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	R	E	Q	E	E	L	E	E	A	L	E	V	E	R	Q	E	N	E	Q	R	R	L	F	I	Q	K	E	E	Q	L	Q	Q	I	L	K	R	K	N	K	Q	A	F	L	D	E	L	E	S	S	D	L	P	V	A	L	L	L	A	Q	H	K	D	R	S	T	Q	L	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																	S