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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6nmiB_

Fold library idPDB HeaderMoleculeTitle
c6nmiB_3.70PDB header: transcriptionChain: B: PDB Molecule: general transcription and dna repair factor iih helicase


Added to library: Sat Mar 16 08:43:59 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKL
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Known secondary structure (DSSP)

SS

SSS
B
TT





TTS

TTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence IYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTAS
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Known secondary structure (DSSP)
SSS
S







TTTS


TTTTT

SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence YVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANVVVYSYH
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Known secondary structure (DSSP) ST
SSS


STTTS



S

B
T

TTTT
S
ST
 .........220.........230.........240.........250.........260.........270.........280
Sequence YLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQR
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Known secondary structure (DSSP) TTS
TTT

SS
TT
S
ST


 .........290.........300.........310.........320.........330.........340.........350
Sequence LRDEYRRLVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVV
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Known secondary structure (DSSP) SSSS
SS
SS
SSS

S

SS
TTS


S

TT

ST
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence QESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP
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Known secondary structure (DSSP)
S


STT



GGGGTT

SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCL
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Known secondary structure (DSSP) S
SSS
SSS



S
S

B
SS


TTSST


S
B



SS

 .........500.........510.........520.........530.........540.........550.........560
Sequence CPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN
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Known secondary structure (DSSP) B
S
TTS




TTTTS



S
S
TTTTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence IQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQS
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Known secondary structure (DSSP) S

S
TTSSSSS
SSSGGGTT



TTT
SS




S

 .........640.........650.........660.........670.........680.........690.........700
Sequence RILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEH
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Known secondary structure (DSSP) TS


TTS

SSS

SGGGGSSTTGGGS
TT
 .........710.........720.........730.........740.........750.........760
Sequence LTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQLESEETLKRIEQIAQQL
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Known secondary structure (DSSP)

TTTTTB
TSS


GGGTTTTT
B
STTSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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