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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6nlpA_

Fold library idPDB HeaderMoleculeTitle
c6nlpA_1.90PDB header: transport proteinChain: A: PDB Molecule: bacterial extracellular solute-binding family protein;


Added to library: Sat Jan 26 08:31:05 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEXVSLXTKGGYDLVTASGDASL
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Known secondary structure (DSSP)

TT

TTSS
BSSS
TT
BSS


SS


S
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLIXGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLXYNTKTFPTPPDSWQVVFVE
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Known secondary structure (DSSP) TT
B

B
GGG
GGGGGS
T
TTTTT


TTT
SS



TS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDT
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Known secondary structure (DSSP)
B
TTSSB
TTSSSTT
GGG


STTS

TT
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TVQXSDFKNEGVVASSAWPYQANALKAEGQPVATVFPKEGVTGWADTTXLHSEAKHPVCAYKWXNWSLTP
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Known secondary structure (DSSP) S



TT



TT

BTT
S
TS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIXG
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Known secondary structure (DSSP) S
SSGGGGGS
TTT
TTTGGGGGG






TTTTS

T
 ..
Sequence GR
Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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