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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6n7pX_

Fold library idPDB HeaderMoleculeTitle
c6n7pX_3.60PDB header: rna binding proteinChain: X: PDB Molecule: nuclear cap-binding protein complex subunit 1;


Added to library: Sat Sep 21 08:27:06 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CKEMMPDIRTIGESVKAFEDDIKFLSEAIMNEYGHEDYFNNALLSTLNAVVVEQPQKQAAIALLTMVVNS
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Known secondary structure (DSSP)
TTTTTT
SSS

STTTTTTTS
GGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence KNNVAGKSIINYFFEELQKWCKQTYNDEFKSTSNETGPWNKIKLILRFLSILSPMFLVDELINIYKSLFE
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Known secondary structure (DSSP)
TTSTTS
SS


TTTTTB
T
 .........150.........160.........170.........180.........190.........200.........210
Sequence LSIELNNLDPGNRVPLSEAIYTNTLLNIPYLFFFNRNNDGLRTKVEELLAYVEQNYLVKTTDINLLREYN
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Known secondary structure (DSSP) TTT




STT

TTTT



SSTT
SB
 .........220.........230.........240.........250.........260.........270.........280
Sequence GEPPYEMVELVRVVLPNVKKALINNLEQLNELFPDWNHLLTPQTGDEGFNDALTLPSVDDLKSFVRLNKN
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Known secondary structure (DSSP)

SS



BTTT


SS


SSS
TTS
SSSS
S
TSS

B

TT






 .........290.........300.........310.........320.........330.........340.........350
Sequence FGSVDSMWKTPRYAFHVYLPNSAGNFETVVPISTYAGQLFNDIIIDLVESLEFNRKEVARQVITLDLFFK
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Known secondary structure (DSSP)
TTSS






B





TTSSSSSS



TTSTT
S


SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence AGIFTEPGESIAQLIATYEENPLAPTFKIEDLAIETILGLIFKLPSVSQPFAYFYTLLVDICQNSPKAIA
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Known secondary structure (DSSP) SSS

TTSS
TT




SSS
SSTTT

T
SS

SS
S
TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence PVFGRAFRFFYSHLDSLDFELKLRYLDWFSIQMSNFNFSWKWNEWEDDSIKFGKYFYNPKVNFAKNLIQK
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Known secondary structure (DSSP) TGGGB
TTTTS


GGGGTSTTS
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence ELRLTSNFSEVEDSLPQEFTKYLDTSYIPRDQLINYYQSLFTGYTVEEDSVRKNDLYFRQEGVPMENTVR
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Known secondary structure (DSSP) S
S
SSGGGGS







TTS
TTTS

TTS

SSS





STTSTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence KILDYTHKANNSREVTELESILGELKNEYGSIISDFNRFVIILLVQAVTDSGSRSLSHANKYINDLKEDL
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Known secondary structure (DSSP) TTSTT

TTT
SS
SS
TTT
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence KTIFAKIELDIETKEYIIIEAVLTFWNANPQTGFLVADAFKYAGLLTSRTIFTFIFNETGLKNNGLIEAT
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Known secondary structure (DSSP) TT
SSSSSSTT
TTSS
TTSTTGGGSS
S

 .........710.........720.........730.........740.........750.........760.........770
Sequence AIEAVFRNLSQQISEENESGNNFEFVFERLCTIANSTIDLLDVNADEDIEIPKVNGEMDIDDIEDDKLDL
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Known secondary structure (DSSP) TTTSSTTTTTSSSSS




TTSSSSSSS

TT
 .........780.........790.........800.........810.........820......
Sequence KWKYFTVIGFIKSILRRYSHEYRELADKFIANIDNAIPHESTRRTISNWIQETKEV
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Known secondary structure (DSSP) STTTTTTT
TTTTTTTSTTTTS
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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