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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6mzlA_

Fold library idPDB HeaderMoleculeTitle
c6mzlA_23.00PDB header: transcriptionChain: A: PDB Molecule: transcription initiation factor tfiid subunit 1;


Added to library: Sat Dec 1 08:37:32 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FSLAGFLFGNINGAGQLEGESVLDDECKKHLAGLGALGLGSLITELTNDEGWVRSTEDAVDYSDINEVAE
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Known secondary structure (DSSP)


S
B
SSS
B

SS


TTTTT


S





TT



TT





 .........80.........90.........100.........110.........120.........130.........140
Sequence DIIQHSIPAVELRQPFFPTHMGPIKLRQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQA
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Known secondary structure (DSSP)





TT
TTTS
S


TTT






SSSGGGSSS




T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SGGGEMFFMRTPQDLTGKDGDLILAEYSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCH
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Known secondary structure (DSSP) TTSS





SSGGG
TTSS


SSSS
SS


TT





SS







SSS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence TSPFLGSLHPGQLLQAFENNLFRAPIYLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNS
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Known secondary structure (DSSP) S
SSSS


TT
SSS

TT


SS







S



TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKS
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Known secondary structure (DSSP)

SSS

TTS
TTT

SSS


T
 .........360.........370.........380.........390.........400.........410.........420
Sequence DFRLPTEEEIRAMVSPEQCCAYYSMIAAEQRLKDAGYGEKSFKIDDEVRTAPWNTTRAFIAAMKGKCLLE
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Known secondary structure (DSSP) T




S
TT

GGG



TSTTS

 .........430.........440.........450.........460.........470..
Sequence VTGVADPTGCGEGFSYVKIPNKSVAEHQERYKEECQRIFDLQNKVLSSTEVL
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Known secondary structure (DSSP)
SSTT
SSSSSSS













Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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