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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6mmvD_

Fold library idPDB HeaderMoleculeTitle
c6mmvD_4.71PDB header: transport proteinChain: D: PDB Molecule: glutamate receptor ionotropic, nmda 2a;


Added to library: Sat Dec 1 08:37:24 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LNIAVLLGHSHDVTERELRNLWGPEQATGLPLDVNVVALLMNRTDPKSLITHVCDLMSGARIHGLVFGDD
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Known secondary structure (DSSP)

SS


STTSSS
SS


S

S


TT



 .........80.........90.........100.........110.........120.........130.........140
Sequence TDQEAVAQMLDFISSQTFIPILGISGGASMIMADKDPTSTFFQFGASIQQQATVMLKIMQDYDWHVFSLV
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Known secondary structure (DSSP) S

T



SGGGSS





TT


SS

TT

S
 .........150.........160.........170.........180.........190.........200.........210
Sequence TTIFPGYRDFISFIKTTVDNSFVGWDMQNVITLDTSFEDAKTQVQLKKIHSSVILLYCSKDEAVLILSEA
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Known secondary structure (DSSP)
SSSS
TT
SS





SS

SSST

SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence RSLGLTGYDFFWIVPSLVSGNTELIPKEFPSGLISVSYDDWDYSLEARVRDGLGILTTAASSMLEKFSYI
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Known secondary structure (DSSP) TT


SSS
TTT


SS


TTS
TT


SSS
TTT
S

 .........290.........300.........310.........320.........330.........340.........350
Sequence PEAKASCYGQPLHTLHQFMVNVTWDGKDLSFTEEGYQVHPRLVVIVLNKDREWEKVGKWENQTLSLRHAV
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Known secondary structure (DSSP)



S
SS





GGGTTTS

BTTB


B
TTS
BSS



TTSS
SSSS
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence WPRYKSFSDCEPDDNHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGF
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SSS









BTTT

BTTTTB

TTS
SSSS



 .........430.........440.........450.........460.........470.........480.........490
Sequence CIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFV
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Known secondary structure (DSSP) T




SS
SS

BSSS
B
TTSSSBB
S




SB




S
 .........500.........510.........520.........530.........540.........550.........560
Sequence ETGISVMVSFVDQVTGLSDKKFQRPHDYSPPFRFGTVPQGSTERNIRNNYPYMHQYMTRFNQRGVEDALV
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Known secondary structure (DSSP) B





S


TT
GGGG
TTTSSS






TT

TT

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence SLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEM
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Known secondary structure (DSSP) TTS
S
TSTTS
SSTTSSSS


B


BB
TT
TTTTT
 .........640..
Sequence EELETLWLTGIC
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Known secondary structure (DSSP)





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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