Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6mf2A_

Fold library idPDB HeaderMoleculeTitle
c6mf2A_3.61PDB header: blood clottingChain: A: PDB Molecule: coagulation factor viii;


Added to library: Sat Sep 14 08:44:05 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ATRRYYLGAVELSWDYMQSSVVYKKTLFVEFTDHLFNIAKPRPPWMGLLGPTIQAEVYDTVVITLKNMAS
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)












SS










BSSTT

SB



TTT
S

SS









SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVD
Predicted secondary structure




















































SS confidence





































































Known secondary structure (DSSP) S
B

SSS


STT



S




STTSTTT
B
SS









TTTS

TTS
S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLFAVFDEGKSWHSWPKMHTVNGYVNRSLPGLIGCHR
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP) TT


SS

S

S

SS



SSSSS




BTTB
SS

TT

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KSVYWHVIGMGTTPEVHSIFLEGHTFLVRNHRQASLEISPITFLTAQTLLMDLGQFLLFCHISSHQHDGM
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) S
B


SS




TT

TTSSB


SS
B




S



SS

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EAYVKVDSCPEKHPKTWVHYIAAEEEDWDYAPLVLAPDDRSYKSQYLNNGPQRIGRKYKKVRFMAYTDET
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)









B

SS
S





SSS


SS


SBSSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence FKTREAIQHESGILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDVRPLYSRRLPKGVKHLKDFPILP
Predicted secondary structure





























































SS confidence





































































Known secondary structure (DSSP)


B



SSSSSS


B

BTT

SSS
B

SS

B

BSS

S

SS
SSGGG

B
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence GEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASGLIGPLLICYKRNVILFSVFDENRSWYLTE
Predicted secondary structure



























































SS confidence





































































Known secondary structure (DSSP) T
B


GGGS

SSS
S

SSTTT




GGGSGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence NIQRFLPNPAGVQLEDPEFQASNIMHSINGYVFDSLQLSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFK
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) SS
TT



S
TTTTB
SS

B



SS

SS

S
SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence HKMVYEDTLTLFPFSGETVFMSMENPGLWILGCHNSDFRNRGMTALLKVSSCKKTRHYFIAAVERLWDYG
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)
SSSS
SS



S

B
S
STTTTTT


B










S
 .........640.........650.........660.........670.........680.........690.........700
Sequence MSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNIMVTFRNQASRPYSFYSSLISYEE
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)






SSS

S




TTSTTTTTS





BTTS
SSS
B

B
S





 .........710.........720.........730.........740.........750.........760.........770
Sequence DPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYFSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQ
Predicted secondary structure

















































SS confidence





































































Known secondary structure (DSSP)





B
TT


TTTS

TTS
SB

SSTTTTTSSS


TT
S
SSS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence VTVQEFALFFTIFDETKSWYFTENMEREDPTFKENYRFHAINGYIMDTLPGLVMAQDQRIRWYLLSMGSN
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)
SS



GGGSTTTTGGG



SSS
GGG

BTTB
SS





SSS



SSG
 .........850.........860.........870.........880.........890.........900.........910
Sequence ENIHSIHFSGHVFTVRKKEEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNK
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP) GG
BTT

SSSS
TT




BB


S


S
TTT



TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence CQTPLGMASGHIRDFQITASGQYGQWAPKLARLHYSGSINAWSTKEPFSWIKVDLLAPMIIHGIKTQGAR
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP)


STTTT
S
GGG
B
S


SSS
GGG
BTT

SSS
SS
SS




SS



 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QKFSSLYISQFIIMYSLDGKKWQTYRGNSTGTLMVFFGNVDSSGIKHNIFNPPIIARYIRLHPTHYSIRS
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TTSSSS

B


SS
SSSS





SSSS



SSS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence TLRMELMGCDLNSCSMPLGMESKAISDAQITASSYFTNMFATWSPSKARLHLQGRSNAWRPQVNNPKEWL
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP)
B

TTS

SB
STTTT
S
GGGS



SSS



GGG
BTT

SSS
SB

SS

SS

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence QVDFQKTMKVTGVTTQGVKSLLTSMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFTPVVNSLDPP
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)
SS


SS
S

SSSS


BSSSSB

B


SSSS



SS
 .........1200.........1210.........1220..
Sequence LLTRYLRIHPQSWVHQIALRMEVLGCEAQDLY
Predicted secondary structure









SS confidence































Known secondary structure (DSSP)


S
SSS

B





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D