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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6m6bM_

Fold library idPDB HeaderMoleculeTitle
c6m6bM_4.10PDB header: transcriptionChain: M: PDB Molecule: transcription-repair-coupling factor;


Added to library: Sat Oct 17 09:07:05 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKGEGKLYLPVEQLPLLKRHLAGRLLVLQAKRKATPG
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Known secondary structure (DSSP)

TTT



SS



TTTGGGTTS
B






 .........80.........90.........100.........110.........120.........130.........140
Sequence RAFPPLPEWDPLVEKGFPYELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGA
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TTTS
S


SSS




SSSS
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QVAFLVPTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRF
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Known secondary structure (DSSP)

S
TTSS


SSSS
TT
S
STTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence RDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIKTFL
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Known secondary structure (DSSP) S




GGGT
STTT


SS

SSTTB


SS
SSS



 .........290.........300.........310.........320.........330.........340.........350
Sequence APFDPLLVREAILFELERGGKVFYVHDRVASIEARRRFLESLVPEARIGVVHGQMPESLIEETMLLFAEG
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Known secondary structure (DSSP) S

T




SS
S

SS


SSS
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence AYDVLLATTIIEAGLDVPEANTILIERADRLGLATLYQLRGRVGRREEEAYAYLFHPPRLTEAAEKRLAA
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Known secondary structure (DSSP) SS

S
STTT



SSS
TTS

S

TT



SSS

 .........430.........440.........450.........
Sequence IADLSDLGSGHLLAERDMEIRGVGSLEVYTELLEEAIRK
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Known secondary structure (DSSP) T

SSSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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