Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6m1dC_

Fold library idPDB HeaderMoleculeTitle
c6m1dC_4.50PDB header: membrane proteinChain: C: PDB Molecule: sodium-dependent neutral amino acid transporter b(0)at1;


Added to library: Sat Mar 14 08:32:49 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VLPNPGLDARIPSLAELETIEQEEASSRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPF
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)



TT
SSSS

SSSTTTSTTTS




SS
SSTTTTTTS
STTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSF
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP)
S
S
TT

ST
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence QEPLPWSDCPLNENQTGYVDECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIR
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP)
SS
TTTS

B
TTSSSB
S
TTS


SSSS





TSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence GIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFG
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) SSTTTTTSS

SSSTTTTT


GGGSSSS

SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGN
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TTSS
TT


S


STT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLFFIML
Predicted secondary structure




































SS confidence





































































Known secondary structure (DSSP)
STTT
STGGGS






TTTSSS



TTTTTTSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence FCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPL
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) TTTTTTTTT

S
S
S
TTTTSGGGGGGSSSTTTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWD
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TTTTSS


TTTSSS




 .........570.........580.........590.........600.....
Sequence PGYEEFPKSQKISYPNWVYVVVVIVAGVPSLTIPGYAIYKLIRNH
Predicted secondary structure


















SS confidence












































Known secondary structure (DSSP) TT
TT
SS



TTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D