PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6lpfB_

Fold library id	PDB Header	Molecule	Title
c6lpfB_	2.49	PDB header: rna binding protein	Chain: B: PDB Molecule: leucine--trna ligase, cytoplasmic;

Links to external resources
Added to library: Sat Mar 28 09:08:22 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T A K V D F L K K I E K E I Q Q K W D T E R V F E V N A S N L E K Q T S K G K Y F V T F P Y P Y M N G R L H L G H T F S L S K C E F A V G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S
B
S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q R L K G K C C L F P F G L H C T G M P I K A C A D K L K R E I E L Y G C P P D F P K Y Q W G I M K S L G L S D E E I V K F S E A E H W L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B B
B S B T T B
T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y F P P L A I Q D L K R M G L K V D W R R S F I T T D V N P Y Y D S F V R W Q F L T L R E R N K I K F G K R Y T I Y S P K D G Q P C M D H D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G
B
S T T S T T
T T T T
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence R Q T G E G V G P Q E Y T L L K L K V L E P Y P S K L S G L K G K N I F L V A A T L R P E T M F G Q T N C W V R P D M K Y I G F E T V N G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S
S S
S S
G G G G G G T T S
S
G G G G G G
T T S
T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I F I C T Q K A A R N M S Y Q G F T K D N G V V P V V K E L M G E E I L G A S L S A P L T S Y K V I Y V L P M L T I K E D K G T G V V T S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S S T T
G G G G T T
S S
S
S
T T
T T S T T S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence P S D S P D D I A A L R D L K K K Q A L R A K Y G I R D D M V L P F E P V P V I E I P G F G N L S A V T I C D E L K I Q S Q N D R E K L A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T
G G G T T T
B T T T B T T T
S T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence A K E K I Y L K G F Y E G I M L V D G F K G Q K V Q D V K K T I Q K K M I D A G D A L I Y M E P E K Q V M S R S S D E C V V A L C D Q W Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T T
B T T S S S
B B T T
B

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence D Y G E E N W K K Q T S Q C L K N L E T F C E E T R R N F E A T L G W L Q E H A C S R T Y G L G T H L P W D E Q W L I E S L S D S T I Y M A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S B
S S
S S S B S
B
T T
T T S
T T T S
S S T

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence F Y T V A H L L Q G G N L H G Q A E S P L G I R P Q Q M T K E V W D Y V F F K E A P F P K T Q I A K E K L D Q L K Q E F E F W Y P V D L R V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T S
S
T T
G G G
T T
S S S S
S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence S G K D L V P N H L S Y Y L Y N H V A M W P E Q S D K W P T A V R A N G H L L L N S E K M S K S T G N F L T L T Q A I D K F S A D G M R L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T T S T T
G G G S
B
T T
B T T T T B
B

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L A D A G D T V E D A N F V E A M A D A G I L R L Y T W V E W V K E M V A N W D S L R S G P A S T F N D R V F A S E L N A G I I K T D Q N Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S S S
T S T T S B
S
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence E K M M F K E A L K T G F F E F Q A A K D K Y R E L A V E G M H R E L V F R F I E V Q T L L L A P F C P H L C E H I W T L L G K P D S I M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T T
B T T T
T T
S S
G G G

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence A S W P V A G P V N E V L I H S S Q Y L M E V T H D L R L R L K N Y M M P S H C T I Y V A K N Y P P W Q H T T L S V L R K H F E A N N G K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence P D N K V I A S E L G S M P E L K K Y M K K V M P F V A M I K E N L E K M G P R I L D L Q L E F D E K A V L M E N I V Y L T N S L E L E H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G G G G T T T G G G G G
S S
S S
T T
S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . .

Sequence E V K F A S E A E D K I R E D C C P G K P L N V F R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S
B T T B

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	A	K	V	D	F	L	K	K	I	E	K	E	I	Q	Q	K	W	D	T	E	R	V	F	E	V	N	A	S	N	L	E	K	Q	T	S	K	G	K	Y	F	V	T	F	P	Y	P	Y	M	N	G	R	L	H	L	G	H	T	F	S	L	S	K	C	E	F	A	V	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T	T												S	S											B		S	S			B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	R	L	K	G	K	C	C	L	F	P	F	G	L	H	C	T	G	M	P	I	K	A	C	A	D	K	L	K	R	E	I	E	L	Y	G	C	P	P	D	F	P	K	Y	Q	W	G	I	M	K	S	L	G	L	S	D	E	E	I	V	K	F	S	E	A	E	H	W	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T									B	B			B	S																	B	T	T	B													T	T									T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	F	P	P	L	A	I	Q	D	L	K	R	M	G	L	K	V	D	W	R	R	S	F	I	T	T	D	V	N	P	Y	Y	D	S	F	V	R	W	Q	F	L	T	L	R	E	R	N	K	I	K	F	G	K	R	Y	T	I	Y	S	P	K	D	G	Q	P	C	M	D	H	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T					G	G	G			B		S	T	T	S																	T	T													T	T	T	T					G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	R	Q	T	G	E	G	V	G	P	Q	E	Y	T	L	L	K	L	K	V	L	E	P	Y	P	S	K	L	S	G	L	K	G	K	N	I	F	L	V	A	A	T	L	R	P	E	T	M	F	G	Q	T	N	C	W	V	R	P	D	M	K	Y	I	G	F	E	T	V	N	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B	S	S		S	S															S	S			G	G	G	G	G	G	T	T	S									S		G	G	G	G	G	G								T	T	S								T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	F	I	C	T	Q	K	A	A	R	N	M	S	Y	Q	G	F	T	K	D	N	G	V	V	P	V	V	K	E	L	M	G	E	E	I	L	G	A	S	L	S	A	P	L	T	S	Y	K	V	I	Y	V	L	P	M	L	T	I	K	E	D	K	G	T	G	V	V	T	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T	T		S	S	S	T	T										G	G	G	G	T	T						S	S		S		S								T	T			T	T	S	T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	P	S	D	S	P	D	D	I	A	A	L	R	D	L	K	K	K	Q	A	L	R	A	K	Y	G	I	R	D	D	M	V	L	P	F	E	P	V	P	V	I	E	I	P	G	F	G	N	L	S	A	V	T	I	C	D	E	L	K	I	Q	S	Q	N	D	R	E	K	L	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T																					T	T			G	G	G	T	T	T									B	T	T	T	B	T	T										T			S	T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	A	K	E	K	I	Y	L	K	G	F	Y	E	G	I	M	L	V	D	G	F	K	G	Q	K	V	Q	D	V	K	K	T	I	Q	K	K	M	I	D	A	G	D	A	L	I	Y	M	E	P	E	K	Q	V	M	S	R	S	S	D	E	C	V	V	A	L	C	D	Q	W	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	T	T	T	T	T		B															T	T	S								S	S			B	B	T	T			B
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	D	Y	G	E	E	N	W	K	K	Q	T	S	Q	C	L	K	N	L	E	T	F	C	E	E	T	R	R	N	F	E	A	T	L	G	W	L	Q	E	H	A	C	S	R	T	Y	G	L	G	T	H	L	P	W	D	E	Q	W	L	I	E	S	L	S	D	S	T	I	Y	M	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T															S	B		S	S																						S	S	S	B	S		B		T	T		T	T	S				T	T	T	S		S	S	T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	F	Y	T	V	A	H	L	L	Q	G	G	N	L	H	G	Q	A	E	S	P	L	G	I	R	P	Q	Q	M	T	K	E	V	W	D	Y	V	F	F	K	E	A	P	F	P	K	T	Q	I	A	K	E	K	L	D	Q	L	K	Q	E	F	E	F	W	Y	P	V	D	L	R	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T					T	T	T		T	T	S		S			T	T				G	G	G												T	T					S	S	S	S																	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	S	G	K	D	L	V	P	N	H	L	S	Y	Y	L	Y	N	H	V	A	M	W	P	E	Q	S	D	K	W	P	T	A	V	R	A	N	G	H	L	L	L	N	S	E	K	M	S	K	S	T	G	N	F	L	T	L	T	Q	A	I	D	K	F	S	A	D	G	M	R	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	T	T	T													S	T	T		G	G	G	S			B										T	T				B	T	T	T	T	B			B
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	A	D	A	G	D	T	V	E	D	A	N	F	V	E	A	M	A	D	A	G	I	L	R	L	Y	T	W	V	E	W	V	K	E	M	V	A	N	W	D	S	L	R	S	G	P	A	S	T	F	N	D	R	V	F	A	S	E	L	N	A	G	I	I	K	T	D	Q	N	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S		S	S	S	S																													T	S	T	T	S	B		S				S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	E	K	M	M	F	K	E	A	L	K	T	G	F	F	E	F	Q	A	A	K	D	K	Y	R	E	L	A	V	E	G	M	H	R	E	L	V	F	R	F	I	E	V	Q	T	L	L	L	A	P	F	C	P	H	L	C	E	H	I	W	T	L	L	G	K	P	D	S	I	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T										T															T	T			B																T	T	T												T	T		S	S		G	G	G
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	A	S	W	P	V	A	G	P	V	N	E	V	L	I	H	S	S	Q	Y	L	M	E	V	T	H	D	L	R	L	R	L	K	N	Y	M	M	P	S	H	C	T	I	Y	V	A	K	N	Y	P	P	W	Q	H	T	T	L	S	V	L	R	K	H	F	E	A	N	N	G	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	S	S												S	S																			T	T	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	P	D	N	K	V	I	A	S	E	L	G	S	M	P	E	L	K	K	Y	M	K	K	V	M	P	F	V	A	M	I	K	E	N	L	E	K	M	G	P	R	I	L	D	L	Q	L	E	F	D	E	K	A	V	L	M	E	N	I	V	Y	L	T	N	S	L	E	L	E	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	G	G	G	G	G	G	T	T	T																G	G	G	G	G		S	S		S	S									T									T		S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.
Sequence	E	V	K	F	A	S	E	A	E	D	K	I	R	E	D	C	C	P	G	K	P	L	N	V	F	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	T	T	S									B	T	T	B