PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6lm0B_

Fold library id	PDB Header	Molecule	Title
c6lm0B_	2.65	PDB header: membrane protein	Chain: B: PDB Molecule: rhodopsin;

Links to external resources
Added to library: Sat Oct 24 08:40:12 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S S G M T Q F W L W V G F I G M V I G C I Y F G M K A S A M R R R E G M E F P L E S F F I T L W A A A L Y L T M I L G E T V T P I N G Q T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S T T T T T T T
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F W G R Y I D W V V T T P L L L M E L G V I A G L R P K L I A G V M G A D I F M I V T G F I G A V E A P P Y N Y L W W L I S T G S F L A I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G S L L T E Y S A S A K R R N G R I N S L F Q T L R N I L I V L W I C Y P I V W I L G A E G F H V I S V G W E T L C Y S V L D V C A K V G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S T T S
S

. . . . . . . . . 220 . . . . . . .

Sequence G F V V V S A G N E T L A Q A S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	S	G	M	T	Q	F	W	L	W	V	G	F	I	G	M	V	I	G	C	I	Y	F	G	M	K	A	S	A	M	R	R	R	E	G	M	E	F	P	L	E	S	F	F	I	T	L	W	A	A	A	L	Y	L	T	M	I	L	G	E	T	V	T	P	I	N	G	Q	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														S	T	T	S	T	T	T																						T	T	T	T				S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	W	G	R	Y	I	D	W	V	V	T	T	P	L	L	L	M	E	L	G	V	I	A	G	L	R	P	K	L	I	A	G	V	M	G	A	D	I	F	M	I	V	T	G	F	I	G	A	V	E	A	P	P	Y	N	Y	L	W	W	L	I	S	T	G	S	F	L	A	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T																					T	T																									T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	S	L	L	T	E	Y	S	A	S	A	K	R	R	N	G	R	I	N	S	L	F	Q	T	L	R	N	I	L	I	V	L	W	I	C	Y	P	I	V	W	I	L	G	A	E	G	F	H	V	I	S	V	G	W	E	T	L	C	Y	S	V	L	D	V	C	A	K	V	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T							T	T	S																													S	T	T	S				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	G	F	V	V	V	S	A	G	N	E	T	L	A	Q	A	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T