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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6lknA_

Fold library idPDB HeaderMoleculeTitle
c6lknA_3.90PDB header: membrane proteinChain: A: PDB Molecule: phospholipid-transporting atpase ig;


Added to library: Sat Jun 13 09:23:40 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PVSETEAYIAQRFCDNRIVSSKYTLWNFLPKNLFEQFRRIANFYFLIIFLVQVTVDTPTSPVTSGLPLFF
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Known secondary structure (DSSP)




SSS


SS







SS
SSSSTTSTTSS

SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence VITVTAIKQGYEDWLRHRADNEVNKSTVYIIENAKRVRKESEKIKVGDVVEVQADETFPCDLILLSSCTT
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Known secondary structure (DSSP) T
B

SSS

S
TTS

SS

TT


SS

SSG
 .........150.........160.........170.........180.........190.........200.........210
Sequence DGTCYVTTASLDGESNCKTHYAVRDTIALCTAESIDTLRAAIECEQPQPDLYKFVGRINIYSNSLEAVAR
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Known secondary structure (DSSP) GG


SSSS

SS



SB

T
STTTT


B

S

SS
SB


B
SSS




B

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLGPENLLLKGATLKNTEKIYGVAVYTGMETKMALNYQGKSQKRSAVEKSINAFLIVYLFILLTKAAVCT
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Known secondary structure (DSSP) SS

SSB

TT
S
S
GGGGGGGSS




S
 .........290.........300.........310.........320.........330.........340.........350
Sequence TLKYVWQSTPYNDEPWYNQKTQKERETLKVLKMFTDFLSFMVLFNFIIPVSMYVTVEMQKFLGSFFISWD
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Known secondary structure (DSSP) TTTSSSTT
S


T
TTTTSS
STTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence KDFYDEEINEGALVNTSDLNEELGQVDYVFTKTGTLTENSMEFIECCIDGHKYKGVTQEVDGLSQTDGTL
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Known secondary structure (DSSP) STT

SSSS
S


SSSSTTGGG
S

BTTTB
S




BSTT







STT
S

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence TYFDKVDKNREELFLRALCLCHTVEIKTNDAVDGATESAELTYISSSPDEIALVKGAKRYGFTFLGNRNG
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Known secondary structure (DSSP) STT
SSSTTTSS





S

S
TTSSSS






S
SS





SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence YMRVENQRKEIEEYELLHTLNFDAVRRRMSVIVKTQEGDILLFCKGADSAVFPRVQNHEIELTKVHVERN
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Known secondary structure (DSSP) B



SSSS



B



TTT



TTSS


STTTTTS


SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence AMDGYRTLCVAFKEIAPDDYERINRQLIEAKMALQDREEKMEKVFDDIETNMNLIGATAVEDKLQDQAAE
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Known secondary structure (DSSP) TT




S

SS







SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence TIEALHAAGLKVWVLTGDKMETAKSTCYACRLFQTNTELLELTTKTIEESERKEDRLHELLIEYRKKLLH
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Known secondary structure (DSSP)



S
TTSS
TT


STTSSS
TTTGGGTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence EFPKSTRSFKKAWTEHQEYGLIIDGSTLSLILNSSQDSSSNNYKSIFLQICMKCTAVLCCRMAPLQKAQI
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Known secondary structure (DSSP) S



SSS
SSSTTTTS

SS

S

SS
SSSS
S

 .........780.........790.........800.........810.........820.........830.........840
Sequence VRMVKNLKGSPITLSIGDGANDVSMILESHVGIGIKGKEGRQAARNSDYSVPKFKHLKKLLLAHGHLYYV
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Known secondary structure (DSSP) TTSSS


SSSSSGGGTTTSS
SSSS
SSS
S
STTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence RIAHLVQYFFYKNLCFILPQFLYQFFCGFSQQPLYDAAYLTMYNICFTSLPILAYSLLEQHINIDTLTSD
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Known secondary structure (DSSP) GGGTTTSS


SS
S

SS
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence PRLYMKISGNAMLQLGPFLYWTFLAAFEGTVFFFGTYFLFQTASLEENGKVYGNWTFGTIVFTVLVFTVT
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Known secondary structure (DSSP) STTTTTGGGSTSSS

SSS




 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LKLALDTRFWTWINHFVIWGSLAFYVFFSFFWGGIIWPFLKQQRMYFVFAQMLSSVSTWLAIILLIFISL
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Known secondary structure (DSSP)




TTTTTSTTTSS

S
SST
 .........1060...
Sequence FPEILLIVLKNVR
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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