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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6lk8e_

Fold library idPDB HeaderMoleculeTitle
c6lk8e_5.50PDB header: structural proteinChain: E: PDB Molecule: outer nup160;


Added to library: Sat Jul 24 08:31:29 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LERSYMELIGAERETSRRNFRDLSLRPDGGPKYADCAGGYCYSESSSLLSATRNRFLHWTSVEISLDINL
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Known secondary structure (DSSP)




S

TT



SS


S
SS


TTT
GGGSS




SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VNNAVRLRILNCSILPGGVHICETPNNIVVLILTNQTVHRLILPHPSRMYRSEIISDSHIQSIFTDIGKT
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Known secondary structure (DSSP) S


SSS


TT
TT
SS

TT
S

SSSTT
SSSSSSS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence NFHDPSNTYVIPAIPGRAPNTTASTAWLSSDGEALFALPSISGGILVIKMPPHDMEGLVTIAELKQSSVM
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Known secondary structure (DSSP)

S
S

TTGGGS




SS

SSS

TTSTTT







 .........220.........230.........240.........250.........260.........270.........280
Sequence QRLLTGWMPSSIRGDQGPAHLPVSLAVHTLDHDSYLFALCQDHKLRMWSYKDQMCLMVADMLEYVPVSKD
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Known secondary structure (DSSP)
S







SSS


TT
TTTT
TTTT





STTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence IRQTAGTGHKLRLAFSETLGILYLGVYLHTPKQGQFCVFQLMCAESNRYSLDHISSIFTNQETLIDFTFD
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Known secondary structure (DSSP)
TTSTTTT





STT



TTS

TTS






S

 .........360.........370.........380.........390.........400.........410.........420
Sequence IWALWLDDDNQTVVKHINFEQAGQWNPVFVNPLPEDDLAISDEQEPQEAYLECLFAPGRFTIAAVQKAIQ
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Known secondary structure (DSSP)
STT



B










SSTT

S
SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence ILRKGSGRVLDLSWEELRKDVTLTVENEIQNQEEFRQINIENWCKFYTCCLQYQETLSRPLALLVHPDTN
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Known secondary structure (DSSP) TS

SGGGTTS




GGGSTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence MVCLLRKGFLSFLAPCSLVEHLYLVPAEHLLTVDESVISDDIDAASDIVNLIQCLRMIADYISEDMAYLM
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Known secondary structure (DSSP) SS

SS
TS


SS
SSTTTT

 .........570.........580.........590.........600.........610.........620.........630
Sequence ESACCHLQRVAEQILEDLIANDIDNIMENIQNKLQDTRNPIRAIGFLLQNMDYEMEQPQPNTRLNLSTIT
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Known secondary structure (DSSP)



TTSSSS


TTS

B


 .........640.........650.........660.........670.........680.........690.........700
Sequence ASSVVCQAICKISATRFLICRDLLILQHLLLRLGDMALIGAGQLLHSQQELIPRAAQLLLSYYMIRWGSQ
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Known secondary structure (DSSP) T


TTTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence CLACAVPVDILESNLQHLSVLELSDSQVEKRRYTSGIQTIVELFFEDVARKHFPHVFIQSGASQNWSDLI
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Known secondary structure (DSSP) TTS




TT

SSSS




TTTTTTTTTTT
SST
B
SSS

TT
TTS


 .........780.........790.........800.........810.........820.........830.........840
Sequence KRITNYLLQLLWPSNPNFQFAECLMRNCQYTQLQEYVRLLLPWCQVNVGSCHFMLAQCYLVAGEGHKALD
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Known secondary structure (DSSP) S
SS


TT
TGGGGS
SGGG

TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence CFSQAASEVEREDFLEKLIRVEEGESVSPRLQYYNRVLRLLEDVGLPELVIQLATIAIGEAWRSQAALRT
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Known secondary structure (DSSP)







TT
GGGTTS
TTTT


 .........920.........930.........940.........950.........960.........970.........980
Sequence RIFKHHLDMGHNNQAYDALTQIPDPSRQLDCLRQLVVVLCERSQLQDLVEFPYVNLHNEVVGIIESRARA
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Known secondary structure (DSSP)
SSTT
TTTTTSS
T
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence VDLMTHNYYELLYAFHIYRHNYRKAGSVMFEYGMRLGREVRTLRGLQKQVNSYLACLNCLRLIRPEYAWI
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Known secondary structure (DSSP) TT

S
TTT


STT
S




 .........1060.........1070.........1080.........1090.........1100.........
Sequence VQPVSGAVYERPGASPKRNYDGESSAVPSSSQIEILELRDLEKEYVLAQTRLTLAKHNP
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Known secondary structure (DSSP)
SSSSS






SS



SSSSTT
S

TT

S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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