PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6lk8J_

Fold library id	PDB Header	Molecule	Title
c6lk8J_	5.50	PDB header: structural protein	Chain: J: PDB Molecule: outer nup133;

Links to external resources
Added to library: Sat Jul 24 08:27:04 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E T V N Y N V Q L F G S S L P V K V M E A L S N A S A D E P M A A C I H E G G W A W L A C N D R L I I W K I S H S S S A K L M V C K E L P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
T T S
T T S T T
S S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P L S D S E W S A D L V D I C A Q T G D P A A A Q S V A L M A A T P E G S S R Y W P N I L H E G T Y I E S Y T E F G S L C A F V T A V K G N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G G G G
T T T T
T T
S
T T
T T
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S F I L S S E K N Q L V R L T P D A S G K M N Q R V L P Q G Q G M L S G I G R R V S T L F G I L S P A V E S T L C S V L W D D C F Y T L T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S
T T
S S S
S S
S
S S S S
S S S
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S S I N K W D L D D T S E S Q V L N W D M S R V L R E Y I S D A I W G S E S D Y D D I K A G I N I N Y L S L N Q N C D G L V I L S A A W H P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T T S T T T T
T T
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G D N P C Q I Y Y T L V T V K D E G Y N I S D E I T V E V T Q F N P V F Q A R G M Q L C Q L V V P N F S S Q A C Y L Y T Q E M I F A C S T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
B
B T T B
S
S
B
G G G
S S S
S S
T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence T G R S T L P Q E K I P F E A Q G D N I V G A G S C E G W P V F F I R K S G M L T V V A R E K T K H L K A A F L R Y C R K D I L G A Q S M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T S
T T T T T
T T
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence D S L F S D S D M E P D D E L D L A V N Q I S V D L I D D Y P A S D P R W A E S V P E E A A G F S N T S L I L L H Q L E D K M K A H S F F V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S S
T T T T S S S S S
T T
S S S
S T T S
T T S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence D F L H Q V G L F S R L T C Q T K G M L V A T R L L L S E H A E K L S A A I V L K N H H A K L P V L V N S A I Q L A L D K R M C T V P Q N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S
T S
S
S S
S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence T A A D V Y F R E V S Q M E I I F E C L V D K E E A D L E S T S I D S V E W A N I V V N V N T I L K D M L H V A C Q Y R Q S K N S L Y K N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T S
S S T T
T T T S
S S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence S G I Q E P E H V P W T A S S G T A G I R S V V T R Q H G I I L K V Y P Q A D S G L R T I L I E Q L A A L L N Y L L D D Y V T Q L K S I D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B T T T B
T T S
T T T T T T G G G G S S
T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence L A N E E R Y N I L E M E Y A Q K R S E L L S P L L I L G Q Y A W A S N L A E K Y C D F D I L V Q I C E M T D N Q S R L Q R Y M T L F A E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S
T T T T T
S S
T S T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence N F S D F L F R W Y L E K G K R G K L L S Q P A S Q H G Q L A A F L Q A L S W L H E L N S Q E F E K A H R T L Q T L A N M E T R Y F C K K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S S
T T T T T
S S
T
S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence T L L G L S K L A A L A S D F Q E D V L Q E K V E E I A E Q E H F L L H Q E T L P K K L L E E K Q L D L N A M P V L A P F Q L I Q L Y V C E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T
T T T T
S S S S
T S T

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence E N K R A N E N D F M K A L D L L E Y I G D D S E V D V E E L K L E I L C K A I K R D E W S A T D G K D D P I E A T K D S I F V K V L Q N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
G G G G
S S T T T T T T T
T T
T
T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . .

Sequence L N K G I E L K G Y L P K A E T L L Q S E E L N S L K T N S Y F E F S L K A N Y E C Y M K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S
T T
T T S
S T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	T	V	N	Y	N	V	Q	L	F	G	S	S	L	P	V	K	V	M	E	A	L	S	N	A	S	A	D	E	P	M	A	A	C	I	H	E	G	G	W	A	W	L	A	C	N	D	R	L	I	I	W	K	I	S	H	S	S	S	A	K	L	M	V	C	K	E	L	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S							S	S															T	T	S								T	T	S							T	T									S	S			G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	L	S	D	S	E	W	S	A	D	L	V	D	I	C	A	Q	T	G	D	P	A	A	A	Q	S	V	A	L	M	A	A	T	P	E	G	S	S	R	Y	W	P	N	I	L	H	E	G	T	Y	I	E	S	Y	T	E	F	G	S	L	C	A	F	V	T	A	V	K	G	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S				G	G	G						G	G	G				T	T	T	T								T	T							S		T	T		T	T																				T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	F	I	L	S	S	E	K	N	Q	L	V	R	L	T	P	D	A	S	G	K	M	N	Q	R	V	L	P	Q	G	Q	G	M	L	S	G	I	G	R	R	V	S	T	L	F	G	I	L	S	P	A	V	E	S	T	L	C	S	V	L	W	D	D	C	F	Y	T	L	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T										T	T	S								T	T		S	S	S		S	S			S		S	S	S	S		S	S	S		T	T																			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	S	I	N	K	W	D	L	D	D	T	S	E	S	Q	V	L	N	W	D	M	S	R	V	L	R	E	Y	I	S	D	A	I	W	G	S	E	S	D	Y	D	D	I	K	A	G	I	N	I	N	Y	L	S	L	N	Q	N	C	D	G	L	V	I	L	S	A	A	W	H	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S									S	S																								T	T	S	T	T						T	T												T	T											T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	D	N	P	C	Q	I	Y	Y	T	L	V	T	V	K	D	E	G	Y	N	I	S	D	E	I	T	V	E	V	T	Q	F	N	P	V	F	Q	A	R	G	M	Q	L	C	Q	L	V	V	P	N	F	S	S	Q	A	C	Y	L	Y	T	Q	E	M	I	F	A	C	S	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S	S		B											B	T	T	B			S								S				B				G	G	G										S	S	S								S	S								T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	T	G	R	S	T	L	P	Q	E	K	I	P	F	E	A	Q	G	D	N	I	V	G	A	G	S	C	E	G	W	P	V	F	F	I	R	K	S	G	M	L	T	V	V	A	R	E	K	T	K	H	L	K	A	A	F	L	R	Y	C	R	K	D	I	L	G	A	Q	S	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T											T	T	S										T	T							T	T	T																									T	T		S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	D	S	L	F	S	D	S	D	M	E	P	D	D	E	L	D	L	A	V	N	Q	I	S	V	D	L	I	D	D	Y	P	A	S	D	P	R	W	A	E	S	V	P	E	E	A	A	G	F	S	N	T	S	L	I	L	L	H	Q	L	E	D	K	M	K	A	H	S	F	F	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	S	S				T	T	T	T															S	S	S	S	S		T	T		S	S	S		S	T	T	S				T	T	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	D	F	L	H	Q	V	G	L	F	S	R	L	T	C	Q	T	K	G	M	L	V	A	T	R	L	L	L	S	E	H	A	E	K	L	S	A	A	I	V	L	K	N	H	H	A	K	L	P	V	L	V	N	S	A	I	Q	L	A	L	D	K	R	M	C	T	V	P	Q	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T											T	T				S		T																				S																	S					S	S			S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	T	A	A	D	V	Y	F	R	E	V	S	Q	M	E	I	I	F	E	C	L	V	D	K	E	E	A	D	L	E	S	T	S	I	D	S	V	E	W	A	N	I	V	V	N	V	N	T	I	L	K	D	M	L	H	V	A	C	Q	Y	R	Q	S	K	N	S	L	Y	K	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T					T	T	T																T	S			S	S	T	T																									T	T	T	S				S	S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	S	G	I	Q	E	P	E	H	V	P	W	T	A	S	S	G	T	A	G	I	R	S	V	V	T	R	Q	H	G	I	I	L	K	V	Y	P	Q	A	D	S	G	L	R	T	I	L	I	E	Q	L	A	A	L	L	N	Y	L	L	D	D	Y	V	T	Q	L	K	S	I	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B	T	T	T	B		T	T	S												T	T									T	T	T	T	G	G	G	G	S	S																													T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	A	N	E	E	R	Y	N	I	L	E	M	E	Y	A	Q	K	R	S	E	L	L	S	P	L	L	I	L	G	Q	Y	A	W	A	S	N	L	A	E	K	Y	C	D	F	D	I	L	V	Q	I	C	E	M	T	D	N	Q	S	R	L	Q	R	Y	M	T	L	F	A	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	T	T																								S	S		T	T	T								T	T													S	S											T	S	T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	N	F	S	D	F	L	F	R	W	Y	L	E	K	G	K	R	G	K	L	L	S	Q	P	A	S	Q	H	G	Q	L	A	A	F	L	Q	A	L	S	W	L	H	E	L	N	S	Q	E	F	E	K	A	H	R	T	L	Q	T	L	A	N	M	E	T	R	Y	F	C	K	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T	T	S	S		T	T	T	T	T		S	S																				T																		S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	T	L	L	G	L	S	K	L	A	A	L	A	S	D	F	Q	E	D	V	L	Q	E	K	V	E	E	I	A	E	Q	E	H	F	L	L	H	Q	E	T	L	P	K	K	L	L	E	E	K	Q	L	D	L	N	A	M	P	V	L	A	P	F	Q	L	I	Q	L	Y	V	C	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S																										T			T	T					T	T			S	S	S	S													T	S	T
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	E	N	K	R	A	N	E	N	D	F	M	K	A	L	D	L	L	E	Y	I	G	D	D	S	E	V	D	V	E	E	L	K	L	E	I	L	C	K	A	I	K	R	D	E	W	S	A	T	D	G	K	D	D	P	I	E	A	T	K	D	S	I	F	V	K	V	L	Q	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T												G	G	G	G		S	S	T	T	T	T	T															T	T						T	T						T														T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.
Sequence	L	N	K	G	I	E	L	K	G	Y	L	P	K	A	E	T	L	L	Q	S	E	E	L	N	S	L	K	T	N	S	Y	F	E	F	S	L	K	A	N	Y	E	C	Y	M	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T	S			T	T			T	T	S		S											T																T	T