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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6lk8E_

Fold library idPDB HeaderMoleculeTitle
c6lk8E_5.50PDB header: structural proteinChain: E: PDB Molecule: outer nup160;


Added to library: Sat Jul 24 08:30:15 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LERSYMELIGAERETSRRNFRDLSLRPDGGPKYADCAGGYCYSESSSLLSATRNRFLHWTSVEISLDINL
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Known secondary structure (DSSP)




S

TT



SS


S
SS


TTT
GGGSS




SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VNNAVRLRILNCSILPGGVHICETPNNIVVLILTNQTVHRLILPHPSRMYDPSNTYVIPAIPGRAPNTTA
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Known secondary structure (DSSP) S


SSS


TT
TT
SS







TTGGGS



 .........150.........160.........170.........180.........190.........200.........210
Sequence STAWLSSDGEALFALPSISGGILVIKMPPHDMEGLVTIAELKQSSVMQRLLTGWMPSSIRGDQGPAHLPV
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Known secondary structure (DSSP)
SS

SSS

TTSTTT

















SSS


TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence SLAVHTLDHDSYLFALCQDHKLRMWSYKDQMCLMVADMLEYVPVSKDIRQTAGTGHKLRLAFSETLGILY
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Known secondary structure (DSSP) TTTT
TTTT





STTS
TTSTTTT





STT

 .........290.........300.........310.........320.........330.........340.........350
Sequence LGVYLHTPKQGQFCVFQLMCAESNRYSLDHISSIFTNQETLIDFTFDIWALWLDDDNQTVVKHINFEQAG
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Known secondary structure (DSSP)

TTS

TTS






S


STT



 .........360.........370.........380.........390.........400.........410.........420
Sequence QWNPVFVNPLPEDDLAISDEQEPQEAYLECLFAPGRFTIAAVQKAIQILRKGSGRVLDLSWEELRKDVTL
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Known secondary structure (DSSP) B










SSTT

S
SS

TS

SGGGTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence TVENEIQQEEFRQINIENWCKFYTCCLQYQETLSRPLALLVHPDTNMVCLLRKGFLSFLAPCSLVEHLYL
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Known secondary structure (DSSP)


GGGSTTTTSS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence VPAEHLLTVDESVISDDIDAASDIVNLIQCLRMIADYISEDMAYLMESACCHLQERVAEQILEDLIANDI
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Known secondary structure (DSSP) S
TS


SS
SSTTTT

T



 .........570.........580.........590.........600.........610.........620.........630
Sequence DNIMENIQNKLQDTRNPIRAIGFLLQNMDYEMEQPQPNTRLNLSTASSVVCQAICKISATRFLICRDLLI
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Known secondary structure (DSSP)
TTSSSS


TTS

B

 .........640.........650.........660.........670.........680.........690.........700
Sequence LQHLLLRLGDMALIGAGQLLHSQQELIPRAAQLLLSYYMIRWGSQCLACAVPVDVEKRRYTSGIQTIVEL
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Known secondary structure (DSSP) T


TTTTTTTS







S
T
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence FFEDVARKHFPHVFIQSGASQNWSDLIKRITNYLLQLLWPSNPNFQFAECLMRNCQYTQLQEYVRLLLPW
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Known secondary structure (DSSP) T
B
SSS

TT
TTS




SSS

TT
TGGGGS
S
 .........780.........790.........800.........810.........820.........830.........840
Sequence CQVNVGSCHFMLAQCYLVAGEGHKALDCFSQAASEVEREDFLEKLIRVEEGESVSPRLQYYNRVLRLLED
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Known secondary structure (DSSP) GGG

TT








TT
GGGTTS
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence VGLPELVIQLATIAIGEARSQAALRTRIFKHHLDMAYDALTQIPDPSRQLDCLRQLVVVLCERLQDLVEF
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Known secondary structure (DSSP) TT




TTTTTSS


 .........920.........930.........940.........950.........960.........970.........980
Sequence PYVNLHNEVVGIIESRARAVDLMTHNYYELLYAFHIYRHNYRKAGSVMFEYGMRLGREVRTLRGLQKQVN
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Known secondary structure (DSSP) S
TT

S
TTT


ST
 .........990.........1000.........1010.........1020.........1030
Sequence SYLACLNCLRLIRPEYAWIVQSQIEILELRDLEKEYVLAQTRLTLAKHNP
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Known secondary structure (DSSP) T
S









S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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