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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6lidD_

Fold library idPDB HeaderMoleculeTitle
c6lidD_2.70PDB header: membrane proteinChain: D: PDB Molecule: b(0,+)-type amino acid transporter 1;


Added to library: Sat May 2 09:13:30 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPY
Predicted secondary structure








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Known secondary structure (DSSP)

S

GGGGTTTS
S

SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLS
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Known secondary structure (DSSP) T
TGGGSTTS


TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLN
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Known secondary structure (DSSP) TTST

STTTTTTSS



TTTTTTGGGST
 .........220.........230.........240.........250.........260.........270.........280
Sequence YITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWIVPLFV
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Known secondary structure (DSSP) TTS
SSSSTTT

S
SSTTSS
TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence AFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPGDINSLVNYFS
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Known secondary structure (DSSP) GGGSSTTTTTSS
SSTT
SSS
S
TTT

TTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence FAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLL
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Known secondary structure (DSSP) TTTSS
SS

SS


TS

ST
 .........430.........440.........450........
Sequence FYFLFVHYKFGWAQKISKPITMHLQMLMEVVPPEEDPE
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Known secondary structure (DSSP) TTT

SSST

S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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