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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6lcpA_

Fold library idPDB HeaderMoleculeTitle
c6lcpA_3.48PDB header: lipid transportChain: A: PDB Molecule: phospholipid-transporting atpase;


Added to library: Sat May 2 09:22:45 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence APRKLYFNLPPELKDEEGHPIQQFPRNKIRTAKYTPLSFIPKNLWFQFHNIANIFFLFLVILVIFPIFGG
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Known secondary structure (DSSP)






TTS
TTTTT
S



S



SS

TTTTTSTTTSTTSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VNPGLNSVPLIVIITVTAIKDAIEDYRRTILDIELNNAPVHRLSGKARFHKDAWKNLVVGDFVRIYNDDE
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Known secondary structure (DSSP)





TT



SSS
GGG

TT


TT
B
 .........150.........160.........170.........180.........190.........200.........210
Sequence LPADIIILATSDPDGACYVETKNLDGETNLKVRQALRCGRTLKHARDCERAQFVIESEPPQPNLYKYNGA
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Known secondary structure (DSSP)

S




SSGGG

TTTS


S


STTTT

SSSTTTT






S
TT



 .........220.........230.........240.........250.........260.........270.........280
Sequence IRWKEPREMSEPIGIDNLLLRGCHLRNTEWALGVVVFTGHDTKIMMNAGITPSKRARIARELNFNVICNF
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GGG
SS
S
S





TT
STTTTT

S





SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GILLIMCLIAAIANGIAWGKTDASLAWFEYGSIGGTPALTGFITFWAAVIVFQNLVPISLYISLEIVRTL
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Known secondary structure (DSSP) S
SSSS


SSSSTGGGS
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence QAFFIYSDVGMYYEKIDQPCIPKSWNISDDVGQIEYIFSDKTGTLTQNVMEFKKATINGQPYGEAYTEAQ
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Known secondary structure (DSSP) T
GGG
BTTTTB

S
SS
TTGGGT



STTTTTT





 .........430.........440.........450.........460.........470.........480.........490
Sequence AGMDRRRGINVEEEAKVIREEIAAAKVRAIRGLRELHDNPYLHDEDMTFIAPDFVEDLAGKNGPEQQQAT
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Known secondary structure (DSSP) SSSS
SSS

SS

TTS




TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence EHFMLALALCHTVVAEKQPGDPPKMIFKAQSPDEAALVATARDMGFTVLGMSDGGINVNVMGKDMHFPVL
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Known secondary structure (DSSP) TTTS




SSS


SSTTTS



SSS
TT

 .........570.........580.........590.........600.........610.........620.........630
Sequence SIIEFNSSRKRMSTIVRMPDGRILLFCKGADSVIYSRLKKGEQADMRRETAQHLEMFAVEGLRTLCIAER
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Known secondary structure (DSSP)


TTT

TTS

TTSS
SSS
TT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ELSEEEYREWRREHDLAATALENREEKLEEVADKIERDLTLLGGTAIEDRLQDGVPDTIALLADAGIKLW
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Known secondary structure (DSSP)




TTTTSSSSS

TTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence VLTGDKVETAINIGFSCNLLNNDMDLLRLQVNESDASTEDDYLQLAEEQLKTNLERFNMTGDDEELKRAR
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Known secondary structure (DSSP)
SS
TTSS
SS





TT

TT



STTS
 .........780.........790.........800.........810.........820.........830.........840
Sequence KDHNAPSPTYALVIDGFTLRWVLSDSLKQKFLLLCKQCKSVLCCRVSPAQKAAVVSMVKNGLDVMTLSIG
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Known secondary structure (DSSP) S





SSSSSSSSS

SS


 .........850.........860.........870.........880.........890.........900.........910
Sequence DGANDVAMIQEADVGVGIAGEEGRQAVMSSDFAIGQFRFLQRLVLVHGRWSYRRLAETISNFFYKNMIWT
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Known secondary structure (DSSP) SSSS

SS
STTTTTSSSSSTTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence WSIFWYQCYCNFDIAYIFEYTYILMFNLFFTSVPVILMGVLDQDVSDTVSLAVPQLYRRGIERKEWTQTK
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Known secondary structure (DSSP) TTTT



SSTTT




SS

SS
SS
GGGGTT
SS
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FWLYMIDGVYQSVMSFFIPFIFVVLTPTAAGNGLDVSERTRLGAYIAHPAVITINGYILINTYRWDWLML
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Known secondary structure (DSSP) SSS

SSS




STTT
S


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LSIVLSDVFIFFWTGVYTATTYSAGFYQAAPQVYQELTFWMCLIVTPALCLLPRLVVKCIQKQRFPYDVD
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Known secondary structure (DSSP) TTSTTTSSSSS
TT
TS

 .........1130.........1140
Sequence IIREQANRGDFAAADAAAVA
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Known secondary structure (DSSP) SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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